RNA id: AMCG00013349


Basic Information

Item Value
RNA id AMCG00013349
length 960
RNA type mRNA
GC content 0.62
exon number 5
gene id AMCG00013349
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 28991437 ~ 28996380 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAACGTGTAGCTCCAATGCAAAACAGTGCGCAGGCGTGCAGACGTGCGCTTGTGTTGGACCGCTACGTGCGGCAGTCACACAGTGTACCGTCAGAGATGCAGGTTGAGTTCCTCATCTTGTTGCAAGCTgtgatatctctctctctctttccaggtTTTTCCCTGGCCGGCCTCTCCACGACCCCCCGGAAGCGCCAGGTGCGTTTCTCTGCCCGTCACGACATCATGCTCCTGCGTGAGGTCATTGCCCAGAACCCCTTCTCCTCCAAGGAGCCCGGCCGCATCTGGTCTAGGGTGGGCGAGCTCGTCAGTACCGCCCTGCAGGATGAGAGCTTCGAGGTGGACGCCAGGCGCTGCAGGGAGAGGACCGCACTGCTCCTGGACTACTATAAGAAACAGGACTTTGCCAGCCTGCGGAGgttcGGGACGGAGCGTCTGTACGCACAGAAGGAGGACCTGCTACATGAGGTACTGGAGCTGGAGGCTGAGAAGGGTCTGCTAGGAGCTACAGAGAGCAAGTACCAGGACGAGGCAGCTGTGGAGCTGAGGAAGAGGGCGCTGGGAGAGCTGGAGCATCCTGAGTCTGAGGAGAAACCGGTGCCACTGACTCAGCCAGGGCCAGCAGAGGCAGtTGGGCTGCCCACCCCAGAGACAGAGGAGCAAGAAGAGCTGCCAGAGCTGGCTGCGCCAATGGCCAAGAGGCCCTGCCAGTGCTGCTGCCAGACGTACTCGGAGATCCTGAGTTTCCTGGAGAAGCGGGCGGAGGCGGAGCAGCACCTGCGCGAGGAGGAGGTGGCCCTGCGGCGCGAGGAGCTGGAGATCCAGAGGAGCAAGATCGccctggagagggagaggctgAGCGCTGAGCGTAGGGAGAGGGAGCGCCGCTTCGAGCTGGAGAGCCAGGAGAGGCAGGTCATCTTGGACCTGCTCAAGGAGAAGGTGCTCCGGGGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54497 lncRNA downstream 224085 28676824 ~ 28767352 (-) False G43714
TU54511 lncRNA downstream 252664 28737957 ~ 28738773 (-) True G43725
TU54496 lncRNA downstream 269271 28676824 ~ 28722166 (-) True G43714
TU54508 lncRNA downstream 273497 28716291 ~ 28717940 (-) True G43724
TU54463 lncRNA downstream 500341 28488842 ~ 28491096 (-) True G43691
TU54654 lncRNA upstream 118842 29115222 ~ 29117961 (-) True G43834
TU54656 lncRNA upstream 118842 29115222 ~ 29117961 (-) False G43834
TU54650 lncRNA upstream 122993 29119373 ~ 29121319 (-) True G43831
TU54758 lncRNA upstream 501330 29497710 ~ 29499573 (-) True G43919
TU54896 lncRNA upstream 930003 29926383 ~ 30028230 (-) True G44034
AMCG00013348 mRNA downstream 2432 28974690 ~ 28989005 (-) True AMCG00013348
AMCG00013339 mRNA downstream 213963 28771933 ~ 28777474 (-) True AMCG00013339
AMCG00013332 mRNA downstream 470000 28502022 ~ 28521437 (-) True AMCG00013332
AMCG00013331 mRNA downstream 495438 28492946 ~ 28495999 (-) True AMCG00013331
AMCG00013326 mRNA downstream 773379 28210403 ~ 28218058 (-) True AMCG00013326
AMCG00013347 mRNA upstream 65508 29061888 ~ 29063240 (-) True AMCG00013347
AMCG00013353 mRNA upstream 102607 29098987 ~ 29114047 (-) True AMCG00013353
AMCG00013355 mRNA upstream 131091 29127471 ~ 29155513 (-) True AMCG00013355
AMCG00013354 mRNA upstream 164850 29161230 ~ 29173911 (-) True AMCG00013354
AMCG00013357 mRNA upstream 181948 29178328 ~ 29202068 (-) True AMCG00013357
TU54456 other downstream 523531 28467312 ~ 28467906 (-) True G43684
TU54344 other downstream 918650 28068213 ~ 28072787 (-) True G43594
TU54196 other downstream 1422286 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 1698364 27273229 ~ 27293073 (-) True AMCG00013295
TU53964 other downstream 2434113 26556354 ~ 26557324 (-) True AMCG00013264
TU54700 other upstream 257016 29253396 ~ 29254316 (-) True G43869
TU54894 other upstream 1010384 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 1084656 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other upstream 1084656 30081036 ~ 30083345 (-) True AMCG00013386
TU55007 other upstream 1169437 30165817 ~ 30169136 (-) False AMCG00013390

Expression Profile