RNA id: AMCG00013351


Basic Information

Item Value
RNA id AMCG00013351
length 3573
RNA type mRNA
GC content 0.63
exon number 19
gene id AMCG00013351
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29080000 ~ 29091607 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTAAACAGCAGCTGAAACTTGAAGATCGATCGATTGTGCCTCGAGACGTTGTCCGTCGCCTGAGTCCCAATGACAGCCAGTGCGGGACTGTGATTGACGTCAACATTGAATGTGCAGTGAAACTTGTTGGAACAAATTGTGTCCTGTACCCAGTGAACAGCAGAGACCTCCAACACATATGGTCTTTCATGTACGGTGACTACATCGCTTATGACTTCTGGCTGGGGAAAATCTATGACCTGACAAACCACGTTATCTTGAAGCTGTCCAACGGAGCCAGGTGTTCCATGAGCGTCGAGGACGGAGCAAAGCTGTACGATGTGTGTCCCCACGTCAGCGACTCGGGCCTGTTCTTCGACGAGGCATATGGTTTCTACCCGGGCCAAGTTCTGATCGGCCCTTCGAAGGTGTTCTCCAACGTGCAGTGGCTGTCGGGGGTCAAACCCGTCCTCAGCAAGAAGAGCAAGTTCAGGGTGGTGGTGGAAGAGGTCCAGGTGGTGGAGCTGAAAGTGACCTGGATCACCAAGAGCTTCTGCCCCCGAGGCACGGACAGCGTGTACCCGCCCCCGTCCACCATCGCGCAGGAGAACCTGTGCAGAGTGAAGCGACTGGGCTACTACGAACACACGCAGCGGCAGCTGGGCGACCGGGCTCTGTACGTGTTCCCCGCCAAGGGTGACGCCACACGGATAACCTGCGAGGGTCCGGAGGGGGCCCCTGCCCTGCCTGAGGGCTCTGTCGCCAAGAAGGTTAAAAAGCTACTGAAGAGGGACGTGGGGAAGAAGTCCACAGACACGACGGAGACGCCGGCCTCCAAAGAACCCCCTTCGGAGAAGACGGAGAGCCCAGAAGGAGAGAAGAGGCCGGAGAAAGAGGTGGTGGGTGAGGGAGCCCCAGCGGTGACCCAGACAGAGGAAGTCTGTCCTAATAACGGGCCAGTGGCGGCGGTGGGGCGCCCCAAGGAGCGACGGGAGGGCGGTGCAGTGGTGGCGCCAGAGCTGTGGGTGGAGGGCGGCGAGCAGGACGCAGATGACGAGGCGGCAGACGACACGGACGACACCAGCTCGGTCACCTCCTCCGCCAGCTCCACCGCCTCGTCACAAAGCGGGGGTGCCGGGCCGCACCGCAAGAAAAGCATCCCGCTATCTATCCGCAACCTGAAGCGCAAGCACAAGAAGAAGAGGACCAAGTTCTCCCGCGAGTTCAAGCCAGGAGACAGAGTTGCTGTGGAGATCGTGTCCACGAAGACGTCCGCGGATGTGATGTGGAAGGATGGGACCATCGAGACCAACATCCGCTCCAACGAGCTCTTGCCCATCCAGCACCTGGACAACTACGAGTTCTGCCCCGGGGACTTCGTGGTGGACAAGCGACCCCAGGCCTCCCAAGACCCCGGGGTGTACGGGGTGATCCAGTCCGGGGACCACAAGGGCCGGACGTGCGTGGTGAAGTGGGTCAAACTGAACGCCGGAGGGGATGACGTGGAGGTGATCGGTGAGGAGGAGGACGTGAGCGTGTATGACATCGCCGACCACCCCGACTTCCACTTCCGCACCACCGACATTGTCATCCGGATCTGGAACTCGGAGAATGCCCAGGCAGTGGACTGTGAGAACGAGccgTCCGTGGGGCAGGTGTCTCGGGTGGATGTCACCAGCAAGGTGGAGGTGGTGTGGGCCGACAACACCAAGACCATCGTTCTGCCACAGcACCTGTACAACGTGGAGTCCGAGATCGAGGAGACTGATTACGACTCGGtggagggcagcagcagcggcgcGTCCTCGGAGGAGTGGGAGGATGAGAGCGACAGCTGGGAGACGGACAACGGACAGGTGGAGGACGAGCATGGGGGCGAGTCCGCGCCCGCTCCCACACCCACGGGGCCCCCGGGACACCCCGAGGAGGGAAAGGCCACGGCACAGCGCCTCACCACAGTGGAGGAGCTGGAGGGGGCTATTGCGACCGCCACGCTGGCCGGGGCCGGAGCCGGCGGCATTGACGAGAAGGCTGGCAAGGAGGGGCCGCCCCGGGGCTTCAGGGAGCTGAAGGAGGCGCTGAAGATCCTGGAGAGCCTGAAGAACATGACCGTGGAGCAGCTGTGGACCGGCTCGCCCACCTCGCCCACCGTGGAGCCCGAGAAGCCCACCAAGGAGAAGAAGTTCCTGGATGACTTCAAGAAGCTGCAGGAGAACCTGAAGAAGACTCTGGACAATGTGGCCATTGTGGAGGAGGAGCGCATGGAGGCTGTGGCCGaggtggagaaggaggagaagagcCAGGAGCCCCAGACGCCCGTGCGCTCTGAATGGCCCAGCGACACGCCTGTCCTGTGCCAGCAGAGCGGGGGCAAGCCGGGCGTCACCTTCACCAGCGCCAAGGGGGAGGTGTTCTCAGTGCTGGAGTGGGCACCGGACAGCCACGCGTTTAAGAAGATGGAGTTCCAGCCCGCAGAGGCCAAGAAGTTTTTCAGCACCGTGAGGAAGGAGATGGCCCTGCTGGCGACGTCCCTCCCCGACGGCATCATGGTCAAGACCTTCGAGGACCGCATGGCAAGTGCTGCCTCTTACCTCCTGTCCCCGAACTCCCCTGGTGATCTCTTCTCGGCGCTGATTAAAGGCCCCACGCGCACCCCCTATGAGGACGGCCTTTTCCTCTTCGACATCCAGCTGCCCAACATCTACCCCGCCGTGCCCCCACTGTTCCGCTACCTGTCGCAGTGTAGCGGGCGGCTCAACCCCAACCTGTATGACAACGGCAAGGTGTGCGTCAGCCTGCTGGGCACCTGGATTGGCAAGGGTACTGAGCGATGGACCAGCAAGTCCAGCCTCCTGCAGGTTCTGATCTCCATACAAGGGCTGATCCTGGTGAACGAGCCCTACTACAATGAGGCAGGCTTCGACAGCGACCGCGGGCTGCAGGAGGGCTACGAGAACAGCCGCTGCTACAACGAGATGGCACTCATCAAGATGGTGCAGTCGATGACgcagctgctgctgcagccGGTGGACGTCTTCCAGCAGGAGATCCGCGAGCACTTCCTGTCCAGCGGCTGGCGGCTGGCACAGCGCATCGAGAGCTGGCTGGAGCTGAGCGACGGCGGGGGGGGCAGACGGCACGAGAGTAGGACCCCCGAGCGCCCGCTGTCTACCGAGCCCGGGGAGGAGCTGGGGCCCACCTCGGCACAGGGCAGTCCTcgggaggaggagctggaggactCGGGCCTGGGCATCTCCGGCCTCTCCCAGCTGGAGCACAGCCAGCACTCGGACTCTGAGGCCGCCGGGCCGGGGAAGGGGGTCCCCCCAGGGGCAGAGGGGGCAGCGGGCGGCACAGCAGGGGAGCCCAGGGCCGCCCAGGACTCGGTGGGGGGCCAGCCAGTGGTCAGACcaaagaagaggaggaagagctACCGCAGCTTCCTGCCCGAGAAGAGCGGCTACCCGGACATCGGCTTCCCCCTTTTCCCCCTGTCCAAGGGCTTCACCAAGAGCGTGCGTGGCGTCCTGCAGCACTACCGCGCAGCTCTGAGCCACGCCGGGGTCCCTGAGAGAAGGGAGGACAAGTAA

Function

GO: NA

KEGG:

id description
K10581 UBE2O; ubiquitin-conjugating enzyme E2 O

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54489 lncRNA upstream 341247 28738123 ~ 28738753 (+) True G43712
TU54481 lncRNA upstream 397826 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA upstream 397826 28680810 ~ 28682174 (+) False AMCG00013336
TU54444 lncRNA upstream 690040 28389689 ~ 28389960 (+) True G43673
TU54325 lncRNA upstream 1007201 28068646 ~ 28072799 (+) True AMCG00013317
TU54625 lncRNA downstream 58371 29149978 ~ 29151334 (+) True G43810
TU54612 lncRNA downstream 65092 29156699 ~ 29158493 (+) True G43799
TU54679 lncRNA downstream 85444 29177051 ~ 29178266 (+) False G43853
TU54680 lncRNA downstream 85444 29177051 ~ 29178266 (+) False G43853
TU54681 lncRNA downstream 85444 29177051 ~ 29178266 (+) True G43853
AMCG00013350 mRNA upstream 11598 29067830 ~ 29068402 (+) True AMCG00013350
AMCG00013344 mRNA upstream 20360 29033142 ~ 29059640 (+) True AMCG00013344
AMCG00013346 mRNA upstream 50792 29022007 ~ 29029208 (+) True AMCG00013346
AMCG00013345 mRNA upstream 68725 29004045 ~ 29011275 (+) True AMCG00013345
AMCG00013343 mRNA upstream 109846 28969528 ~ 28970154 (+) True AMCG00013343
AMCG00013352 mRNA downstream 23846 29115453 ~ 29121435 (+) True AMCG00013352
AMCG00013356 mRNA downstream 58635 29150242 ~ 29156585 (+) True AMCG00013356
AMCG00013363 mRNA downstream 476882 29568489 ~ 29573439 (+) True AMCG00013363
AMCG00013365 mRNA downstream 494644 29586251 ~ 29627558 (+) True AMCG00013365
AMCG00013364 mRNA downstream 557894 29649501 ~ 29667051 (+) True AMCG00013364
TU54454 other upstream 591217 28484273 ~ 28488783 (+) True G43682
TU54319 other upstream 1144062 27934074 ~ 27935938 (+) False AMCG00013310
TU54201 other upstream 1489182 27589139 ~ 27590818 (+) True G43476
TU54169 other upstream 1664714 27385665 ~ 27415286 (+) True AMCG00013298
TU54155 other upstream 1921279 27158302 ~ 27158721 (+) True G43434
TU54615 other downstream 12682 29104289 ~ 29104577 (+) True G43802
TU54772 other downstream 549016 29640623 ~ 29658948 (+) False AMCG00013364
TU54850 other downstream 829460 29921067 ~ 29928697 (+) False AMCG00013375
TU55045 other downstream 1127303 30218910 ~ 30222209 (+) False AMCG00013396
TU55098 other downstream 1399220 30490827 ~ 30495656 (+) True AMCG00013416

Expression Profile