RNA id: AMCG00013352


Basic Information

Item Value
RNA id AMCG00013352
length 2402
RNA type mRNA
GC content 0.50
exon number 12
gene id AMCG00013352
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29115453 ~ 29121435 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAAACCCAAACCATgggaaggaagaagaagaagcagatgAAGCCGTGGTGCTGGTATCCTTTTCGGGCGGTCGACTTTTCTTCGGGCCCCTGTGGCGAACGAGTGTGTTTGTGGGTGTCGGGATGTACTGCAACAGAGATTTTGACGACGAGAAGATTCTTATACAGCACCAGAAAGCAAAACACTTCAAGTGTCATATATGTCATAAAAAACTATACACGGGCCCGGGCTTAGCTATTCATTGTATGCAGGTTCACAAAGAAACAATAGATGGTGTTCCCAATGCGATACCTGGCAGGACGGACATTGAATTGGAGATCTATGGCATGGAAGGTATTCCAGAAAAGGACATGGAAGAGAGGAGACGGGTactagaacaaaaaacacaagCTGAAAgtcagaaaaagaaacagaacaacCAGGAGGATTCGGATGATTATGAGGAGGAAGAAGAGCCGGGTCCTTCTTTCCAGCAACAACCAATGCAGCCCCAGACAGGCTTTATGCCCCCCATGACCCAGCCGGGAATGCCCCACGTGCCCGGGGCTCCGGGAATGCCACCGGGGAACTTCTCAGGAATGCCCCCCATGATGCCTGGAGTTCCTCCCATGATGCCCGGTATGCCCCCTGTAATGCCCGGAATGCCCCCAGGTATGATGCCAATGGGTGGGATGATGCCCCCTGGACCCGGGATGCCCCCAATGATGCCCGGTATGCCCCCAGGCATGCCTCCACCTGTCGGACCTCGTCCAGGCATGTCTCACCTGTCCCAAGCTCCCCCCGTCACCACGCCGGGGATGCTCAACAGGCCGGCCATGCCTGCAGCAACAGCCCCTGCTCCTCAGCCCACAGTCACCAAACCACTGTTTCCCAGCGCAGGACAGATGGGGACTCGTGTACCGAGCACAAGTACAAGTACAGCCGTTTCCAGTGCAGACACTCTGTCCGCCTCTTCTAAACCGCTGTTCCCTAGCACGGCACAAGCTCAGCAGGCTGTGTCTGGACCAGTTGGCTCCGATTTCAAACCTCTCACACCTGCAACGTCCTCAGAGCCTCCTAAACCGACATTCCCAGCTTATACTCAGTCTACTGCTTCGACCACTAATGCATCTAATAGCACTGTATCCAAACCACCAGCTACTGTGACAAGTAAGCCTGCTACCCTCACTACAACGAGTGCAACTAGTAAGTTGATCCACCCTGATGAGGATATCTCGCTGGAGGAAAGGAGAGCTCAGTTACCCAAATACCAGAGGAATATTCCCAGGCCAGGGCAGACCCACATGGGTGCCCCGCCTGTCGGACCAATGGGGGGCATGATGCCTCCGCAGCAGGGGATGCCTCCACAGCAGCCAGGGATGAGGCATCCAATGCATGGGCAATATGGAGGTCCCCCCCAGGGAATGCCTGGTTTTATGCCTGGAGGAATGCCTCCATATGGGCAGGGCCCCCCCATGGTCCCTCCATTCCAGGGAGGACCCCCCCGGCCGCCTATGGGAATGAGACCTCCTGTAATGTCTCAGGGAGGTCGCTATTGAAGCCGACACGCCATCTCTTACTAGGTTTTTAGAAGTGAAGTTTAGTAAATGTGGTTCGTAATGTTTTGAAGGAGCTGGAGTAACATGAACGTACCACCTTTATCAAGGCAAGTTTCTGTAATTACATTGCTCTACTGAAAAATGAGGCCTTCACAGCACTTTAGGTGCTGTTGGACTTCGTGTCCCCAACTTTGCTTGGTGAGGGCTTCAGGTATCAAACAGTTATCCCGAcctgttttgtacatttgcatCTGTGACACATCAGTTCAGATTGGGTCTTGTTGCAGGTTTAATCTTTGGCCACAGAGTAGAGTAGTACATGTGATTAATTTCTGTACTGTTGTAAAATTTCTTGTAATAAAACGTGATGAAAACTTGAGGCTGTTTTTTCATGACCCGGGGAGGATCGCGTCGCTTAAGGTTTGTACGTGCATGTAAGTGTATGACCTGTACAGAGTGTGTGTAGCGCAGGTCCAGGGATGTGTGcagactttttttgtttccccatcAAACTTCTCAAAGTGAAATCTGAACAGATGATTTTCTTCCCCCTTCCCACATGATGGCCTACATTTTATCACTTAGACTTTCCCCTCTATTCTAGATTGAAGACTCTCATTAAAACCTTAGCTGTGATTTAGAAACAATGGAGCAGTTAATTGcatcattttaattggttttgctCAACAATGAAATTTGACTGGAACGCCTAAGAGGTGTTTACCCCCTCCTCTCATGTAATTTGTAACACCATATTTCTCATTTAGTGTGTAATATTGGGTTGCCTGTAGGTAATTTACTACATAATTATAATAGGCATTTTATTACAGTGCACATTTACATGTCCTTGAGCTATAAAGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54489 lncRNA upstream 376700 28738123 ~ 28738753 (+) True G43712
TU54481 lncRNA upstream 433279 28680810 ~ 28682174 (+) True AMCG00013336
TU54482 lncRNA upstream 433279 28680810 ~ 28682174 (+) False AMCG00013336
TU54444 lncRNA upstream 725493 28389689 ~ 28389960 (+) True G43673
TU54325 lncRNA upstream 1042654 28068646 ~ 28072799 (+) True AMCG00013317
TU54625 lncRNA downstream 28543 29149978 ~ 29151334 (+) True G43810
TU54612 lncRNA downstream 35264 29156699 ~ 29158493 (+) True G43799
TU54679 lncRNA downstream 55616 29177051 ~ 29178266 (+) False G43853
TU54680 lncRNA downstream 55616 29177051 ~ 29178266 (+) False G43853
TU54681 lncRNA downstream 55616 29177051 ~ 29178266 (+) True G43853
AMCG00013351 mRNA upstream 23846 29080000 ~ 29091607 (+) True AMCG00013351
AMCG00013350 mRNA upstream 47051 29067830 ~ 29068402 (+) True AMCG00013350
AMCG00013344 mRNA upstream 55813 29033142 ~ 29059640 (+) True AMCG00013344
AMCG00013346 mRNA upstream 86245 29022007 ~ 29029208 (+) True AMCG00013346
AMCG00013345 mRNA upstream 104178 29004045 ~ 29011275 (+) True AMCG00013345
AMCG00013356 mRNA downstream 28807 29150242 ~ 29156585 (+) True AMCG00013356
AMCG00013363 mRNA downstream 447054 29568489 ~ 29573439 (+) True AMCG00013363
AMCG00013365 mRNA downstream 464816 29586251 ~ 29627558 (+) True AMCG00013365
AMCG00013364 mRNA downstream 528066 29649501 ~ 29667051 (+) True AMCG00013364
AMCG00013367 mRNA downstream 576397 29697832 ~ 29710210 (+) True AMCG00013367
TU54615 other upstream 10876 29104289 ~ 29104577 (+) True G43802
TU54454 other upstream 626670 28484273 ~ 28488783 (+) True G43682
TU54319 other upstream 1179515 27934074 ~ 27935938 (+) False AMCG00013310
TU54201 other upstream 1524635 27589139 ~ 27590818 (+) True G43476
TU54169 other upstream 1700167 27385665 ~ 27415286 (+) True AMCG00013298
TU54772 other downstream 519188 29640623 ~ 29658948 (+) False AMCG00013364
TU54850 other downstream 799632 29921067 ~ 29928697 (+) False AMCG00013375
TU55045 other downstream 1097475 30218910 ~ 30222209 (+) False AMCG00013396
TU55098 other downstream 1369392 30490827 ~ 30495656 (+) True AMCG00013416
TU55111 other downstream 1441933 30563368 ~ 30568219 (+) True AMCG00013417

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050325 True 1946 mRNA 0.50 10 NC_007114.7 34234029 ~ 34245025 (+)