RNA id: AMCG00013355


Basic Information

Item Value
RNA id AMCG00013355
length 10086
RNA type mRNA
GC content 0.43
exon number 6
gene id AMCG00013355
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29127471 ~ 29155513 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTCTCGGCTGCAGGCCGGCTCTGCGGCTCCGTGCTCAGCATCCTGAGGATCAGCACCTCGGGGGCAATCCACCCCTCGGTGCCCGGGACCCCTGACCGCCGGCTGAAGCTGTGCCGGCCCACCGCCAGCTTCTTGCACAGCCCGAAGTCCGAGATCATGGCCCGCACGTGCCCACGGGCGTTGGGCATCGAGACCAGGATGTTGTGGGGCTTGAGGTCTCGACGGCCGTGCGGAGGCCAGGGGCGGCTGGGGGGTGCGTACCTCCTGCAGGGTGGCGGCGCACAGCTCGATGGCAATGTACTGGAACTGCCGGTCTTTCTCCGTGCAGAAGTAGCGGATGACGTTGGGGTGTTCGTCCGATTCCCGGAGCAGCTGCACCTCGCGGTCGGCGAAACTGAAGCACTCCGGGAGGATCCTCTTCACGGCGACGGCGCGGTCGTCAAAGCGGCCTctgccaggagagagagggacggcCTGTCAACACTTTGCCCCTGCGCTCACCCACCGCAGATAGCGGACACGGGAGGTGGATACGGCACTCCGGTTCCAGATGAAGAGTGCAATACGCTGCCAGTCGAGAAATGGACAGAAGCCCACGTGAGCTCCTGGTTAACATCCATAGGAGTTAAAGAACAGTATGTTAAGAAACTTAACGAAGAGGAAGTAGATGGACCAGTTCTAAGAGAAATAACAGAGGAATTTCTCAAACAGCAGACTGGTATGAAATCGGGGCCAGCGCTCTTAATACTGCAAAAACGCAATGAGCTGATTAATTCTCGGCAGGCTCTGGGAAAGGAGCAGCCTTCTCTGAAGGCAAAAATGTCACCGGATTCCCCAGCTGTCGGCCAAAGTGATCAGCAAGAAACGAGTCCAGTAAGAATCAACGCTGTGAAGGGTCAGGACCGTCCAGAGGCAGAAACAGATGCAGCAGCGGGTCAGAGAGCGAGCTTGTTTTCACAAAAGAGAGACTGCAAACCACGGCCATTTGGCAAAGAGGGGATTGACATCAAATATGTGAAACACAATGTGCTGCAGCCAGAATCGGGAGTTGTGGACCTAATTACCCCCTGCCGTGAATACAAATCTTTAACTACAGCAGCTCGTCTGGATCGTCCCAGACTTCAGGCCAAGTTTGCCAAAGAGCTTCTCAAGTTTGGCTCTGGGTGCATGAATGTTCGCTCAAATGGCACAATTTACTTTGGGGTCGTGGACAGTAGAGAAGACCATGGTTTTGTGCATGGTGAAATCATTGGTGTGCCCGTGGAAGAGAAAGACCTCTATGTTGATGCCTTAGATCACATAGGAAAGAGTTTTTCTGCTCCTGACAGTGAGCATGTCTGGCAGTGCATACGCCCACCACAGTTTATAGAAGTTGTTGACATGAATAGCTCGGAAAAACATTTCGTCATTGAGGTTGACATTGTACCTGCAGTTAGCATTGTAAAGGGCAAAGTTTACTCTGTCCGTCTACCTAATTTTAAGGAATCCTCGAATAAGGTTGAAAGGGAAAAGACCACTATTTATCGCAGAGTAGGAGCCAAAACAGAACCTGTTAGTGACCCCCTTGAGTTCTACCAAAATGTAAAAGACAGAGACGCCCAACGGGAGAGAGCAGAAGTTTCACACTTTCGTAACGCACCAGATGTCTGTGAAGACCTGGGGAGAAAACTGATGGTTCTGCTGACTGGTGGCAAGCAATATATAGAAAAGGACAAGTGGTATATTCTTGTTACAAACAAGTTTCCAAGGGAGGATCTGAACGCCATTGATTTCCTTCTGAACATGAagattttctgtgtgtttgattttgaCCCTGACTCCAAAGTCTCTGGATTTTGCAACAAATATCAAGAGCACCATGCAGCAAACTTGCACTTCTTGCAGAACTACAAACTTCAAGGTGGGGTAAGCATCAATGACTTTGTTAGGCATTTGCAATTATTTGAACAGACCAGCTGGATATTTTGCAATGGAAGGAACGATTACCATGGAAATGAAGTCGCCTGTGATGAAATGACCTGGATCAAAACCAAGAAGACCCTCCTGAAGGAAGCCGTGTCACTGATCTGCAAACAAATTCTGCCAAAGGGcttgttttttgtgatttttcttctCATGTCACCCATTGAGCAGCCCCTTGTGCACACTTTCCACGAGTTCTTTGCGGAAATGCAAGGTCACGAAGAcatcatttgcatttcagaatcTGAAGAAAACCATCTGAAATGGACAGGTTTTGCTCAGGCATCTTGCAGCACCGAAATTGTGAACCGTGCAAaacaaaaatatgttgGAGAGGTTCTTCAGAGAGAAGCATACGGGGAAGTTTCCAAGGTTCTCAgggatattttgaaatggagtCCTGAACAGATACCTGTGagctgtatacatatataccatCATCCAGGCAGTGGTGGGAGTACAGTTGCAAGACAGATCCTTTGGAACAACAGAAGGGACCTGAGATGTGCAGTTGTAAAGCCTTCATACCCTGTTGCCAGGGTCTGTGAGCATGCAGTTAAGCTGCGTGAATATGAAGAAAAGGACCCACAGAAATGCCTCCCTGTGCTCTTATTAATAGAAGACAAAGATGAGGAGTACCTTGATGATCTGAGGCATGAATTAGAAGTTGCTGTCACCACTAAGAAGATCAATCAAAACACGCTGTGCTTCGTTCTGTTGAGCTGCACACGATCTCATGATCCAGAACAAATGTGCAGAGCTTACCCTTTACACAATGTTGCCGTGACCCACAAACTAAAATCAGAGGAGAAAAGACAGTTTGCCGGAAAACGGAAGAAACTGGAAGAGCAGTACCAGCCGGAGTTCATCCTGACTTTTGTGTTGATGAGTGAAGAGTTTGAGAAACAGTACATAAAAGATTTTGTGGAACATTTGCTACAAGGCATTGACCACTCATCTCTCACCAGCCGCCTCATCCGATATGTGGCATTACTCAACTGCTACGTGCAGAACTCCTATATCTCACAATCCCACTGTGAAGCTCTGCTCGCATTAACCATTCATATAGACAGATTCCGCCAGCACAACTTCGAAAGATCACTGAGCGAACAGGCAAAACTTGTGTTCGTACACTTGAGAGATGAGAAGACGTACATCGAATCTGTACGTATAATTCATCCCTTAGTTGCAAAAGAAATTTTGCAGCAGCTCTCAGGCAGCCGGCAGCAACAAAGTGTGATCGCCATGGATCTTCTTAAAGAAGATGTGCTCTTTGAGAACAGGTTTGGAAGAGAGGAGTATGTAAAGTTTCTTCGGGATTTGTTCATGAAGCGCTGCAGAATAAGCAAAGGTGACAAATCTGATAGTTTCTTTTCTCCTCTCATTGAACATGTAAGAGAAAAGGAGACCCCCGAAAGGGCTATTGAACTTTTGCATGCAGCCTATAACCGTTTCaataaagatgtgttttttgcTCAGCAGCTTGCAAGACTGAATTACTCCTATGAGAAGTTTGAGGAAGCCAAATCCTGGGCAGAAATAGCAGCAAAAGAGCGTCCGAACAACTCCTACATTCTGGACACTAAAGGACAAGTGTTTAGGAGATGGTTTGATGCTAAATGTAAAGCAGTGGGAAAACTGAACATGACAGctgaaaacacagcagacacaaTCAAAACAGGACTTATAGCGATtgagtgctttaaaaaatgtcagaaaGTAGCAAATTTGGATAAAGACAGCATTAATAATTCAGGTTTTTATGCAGAAGTAGAAATTGGATGTAATTTGTTGAAGCTCATTTCCTCACTCACAGTATTTTCAAATAGAAACAGTGGTCACAGTGAATTTGTAAAGTATCTGGTCACAGATTATATTCCTGAAGAAGTCAGCAAGCCATGGGAGGACTTCCACTGTGATCTTAAAAGCCTTCAGAAGAACATGTATGAAGCCCTTGAATGGATTTCAGAGGACCTGAGCTATTTTCAGACTGATACCAATGCAGAAGAGGAGGAAGGCAGCAGCTCAGAAATTAAGATAAGCAATCCAAAGACCTGGCTCGTGATTAAATCCTCTGTGTTTGGAAAGTATTTCATTGATAAATCATTCTTTTCAGGTAATCAGGCTTGGATGTCAAACCAAGGCACCGCTTTCATGAGACGCATGAAGATATACCACCTTGGTGGTGGCAACATTACTACCATCTTTTCCATCCTGACTGACCAGAAAATGAAAGACCCAATCAGAGCACTTGAAGACATCATATCCTTGTACCCTAATGACCCACACAATGCAAAGCTAGACCAGATGGACCTTGTGAACTACATAGCATCTCAGATTGCTCTGGGATGTCTGTCAACCGTCTCTCCCAAACTTGCTGCTCTTCATGAACTTCAGAAGCTGAGCCACCAGTTTCCAAAAGAGAGACATAAATGTCAATCTAGTGCTCTGTTCTTACTCACTCTCCTTTTCTGGCCCGAAGAGGATGACAGTGAACATGCTagggaaattaaatatgaaattatcATGCCTGCAGCAGAGTTACTCAAAAGATATTACCGTGTCAAAATGAAAGATGTGCCACGAAGAAAGAGAAGGatttacattcactttttcCTTGGCAATGGAAGTGGGTGGAACAGGGTTGTTCACAAGAGCAAGGTGGAAACACACACCAACCTTCTCACAGTCCCTGAGAAGAGAATGAAGTGGCTCCAGGGAGAGGTCTGTAAGGTGTCAGGAATCACTAAGCTGTTGAAACGTGTCCAGGGCTGGACTGAAGATGGCACTGTCTTTCTTAAGGGTCCCGAAAATAAGAAATTCGAAATCCATGCCTTGAATTCCACTTCAGTGCCTTATGGCAATGAAAATGTCACGTTTTATTTGGGCTTTACATTTCAAGGACCAGTCGCTCACAATATCACAAATATAAAAATCTGCCACTTGAGCAATGGGATGAAAATCATGTAAGCTCCTGGATGAAATCAATAGGAGTTAAAGATACTTACATCGAGAAACTTCATGAAGATGAAGTAACAGGACCAGTTTTAAAAGGGCTTACATCAGACTTTCTAAAAACCGAGACACAGATGAAACCTGGTCAAATACAGCTTCTTCTGTCTAAAAGAGATGAACTTATGACATCTATACATCAGCAAAAATCAGTCAACAAACAAACTGGCAGTTCTACAAAATCAGAAGTTAAGGATCATCAAAATGAAcgtaaagaaattaaacatcaagaagtgaaagcagtgaagggaccAGATCCtgaatcaaagaaaaaaactataaaatcgTTACCAGATTCTCAGCCAAACCTGGAATCTTGTGAACCACACCCATTTGACATAACCGACGAAgtctttaaatatgtaaaacacagAGTTCTTCCACCAGAAACTGGAATAGTCGACTTAATAGTGCCTTGCCATGAGTACAAATCTCTTGGTGAAGCAGTAAAGTTAGACAGAACTAGGCTGCAGGTCAAGTTTTCCAGTGAGGTTATCAGATTTGGAGCAGGGTGCATGAATGTTCGAACAAATGGCACGATCCATTTTGGCATTATGGACAGCAAGAACACTTCCTACCAGCATGGAGAAATTATTGGTATCCCTGTGAAGGACAAAGATTTATTTGTTGATGCATTAGACTACATTGAAAGGAGCTTTACAAATCCTTCCCAACAGGCAGATGCAAGGCAGTGTATCAGGCCCCCAAGGTTCATAGAGGTTATTGACAGAGACAACACAGAGACAAGCTGGGTTGTCGAGGTAGACATTGTACCCAAGGCTGAAATTGTTAAAGGCAAACTCTATAGTGTTCGTATACctaaatttaatgaaaaaactaacaaagtTGAACTTGATAAGAAAACAGTCTATCAGAGAGTAGGGGCCAAAACAGTGAGCATTACTGATGAAGATCATGTTGAGTTTATTCAAGGATTGACAGAAAGAGACCGGAGAAGGCAGGAGGCAGAATCCTCAGTTTATCAGCATCCTTCAGAAATCAGAGAGGATCTTGGGAGAAAACTGTGTATGCTTTTGACTGGTGGCAAGAAATACATGGATGATTCTCTCTGGTACATTATTGTCACTAACAAGTTTGAAAACGACAGCCTGAAGAACATCACATTCTTGCTGAACATGAACATCTTCTGTGTGTTGGATTTTGATCCAGACTCTAGAACCTCTGGACTGTGCTGTCGATATCAAACTCTAAAGCGCTCCACACCAAACGTTCACTTCCTGCATGACTACATGAACGACAGTGACTTAATAAAGAAATTGCAGTTGTTTTATCAGCCCAGCTGGATATTCTGTAATGGGCGCAACGATTATCTTGGAGATGAAAAGCCCTGTGATGAAAATACCTGGataaagaacaagaaaaagcaCCTTAAAAAGGCAATAACTACAATCTGCAATGAAATTCTTCCAAAGGGGacttttcttgtgctttttgtcTTGATGTCAGAGGTGGAACAGCCAATTGTTGACACTTTCCATGAGTTCTATGCTGAAATGAATGGCCACGAGGATGTAATTGTCATTTCAGAGTCCAAAGAACACTACAACAAGTGGGCCAGTCTTGCTCAAACATCTTGTCCAACTGAAACACTGAATCAGATCAGCATAGTTGGGATGCAGATGAGTCATGTAGATGTCACACTTCAAAGCATTCAGCCCTTTACCACAACACTGTCTGATAAACACTTACCGGTGTACAGTAAGGGGCAATGTATGCTTACACCTGATGATGAGAAAGCTATGCTGTCCCTTGAAATCCTCGGTATCAATGCTTTCGATGACATCAATATCAAAGATAGTGTTATAGATGTGGAAGacatagaaaaacatttttaccaAGGAGGAAAAGTGAGTTGGATGAATTTTTGGCTGGCAGACAATGGCAAATGTGGAGAGGTTATTCAACGAGATACATATGAAGAAGTGATTAAAATactagaaaacattttaaaagggaacACACTCTCAAGGTCTGTAGCCAGAATAAACATATACCACCACCCAGGTAGTGGTGGAAGCACCGTCGCTAGACAAACCCTCTGGAACAAGAGGAAAGATCTGAGGTGTGCAGTGGTCAAGCCATCTCACCCTGTAGCAACTGTCTGCGAACATGCAGTCTTACTAAGAGAATTTGAAGAAAAGGACATTAACAAATGTGTCCCTGTGCTTCTGTTGTTGGAAGACTATGAGGACCTTGATGAGCTAAGGCATGGGTTAGGAGAGGCCATCTCCTGCAAGAAAATCAACCCATTGACAATATGCTTCATTCTGCTAAGCTGCAAAAGATCCCATGAGCCTGAAAAGATGGTTAAATCCTTTCCTGCAGAATCAGTAGCCATTACACACAAACTGTCAGACCGGGAAAAGAAACTGTTCTCCAAAAAGCGTGAAGTACTTGAGCAAACATTTGAACCAGAATTCATTCTGACGTTTGTGTTGATGAGTGAAGGGTTTGATGAAAAATACATCAAGAACTTTGTGGGAAATATTCTAAAAGATATTGATCATTCATCTCTTGAAACACACTTAATTGTGTATATAGCGTTGCTCAGTTGTTATGTGCAGCACTCTTATATCTCTGTGTCACATTGTGAAGCCTTTTTGGGCTTAGGCATCTGTGTAGAACCAATACGCCAGAGTTCATTTGAAAATGCCCTGAGTAAAGAAGCAAGGCTTGTTTTGATACACTTCAGGGACAGCATCACTTTTGTTCGTATAATTCACCCTTTGGTGGCACAAGAAATCTTAAATCAACTGTGTTCAGACCAGCAGCAAAGTATATTTGCTATGGCCCTTCTTCAGGAAAAAGTCCTTTTTGAACACAGGTTTGGAAGGAATGACTTTTTGAAGTTCATCAGAGATCTGTTCATTAGACGGTACAAGAGAAGCAAGGGAGACAATGTTGACAGTTTATTTTCTCCTctcattgagcacgtctgtaatGAGGAAAACAACCCACCCAAGGCCATGGACCTGTTAAAATCTGCCTACACCTCTTTAGGAAAGGACCCTTTCCTCGCGCAACAGCTAGCACGACTCTGTTCAACACATGAAAAATTTGAAGATGCAAAACATTGGGCTGAAGTAGCAAAATCACATTTGCCACATGATTCTTTCATTTTGCACACAGAAGCTCAGGTCTACAAGAAATGgttcaattttaaattggaCTCGGTAGACAAAAAGGACAGGACCCCTGAGAACACTGCCGAAATAATTGAAATGGCTCTAAAAGCAACAGCATGTTTCAGAGCCTCTGAAAAAGCAGCAGAGTTGGAAGAAGATCGCATGAATAACACTGCCTATTTCGGAGAGGTGGATGTTTGCTGCCGTTTATTGCAGCTCATTAAATCAGTgaatgttttttcaaatgaaattacTAAGCTTCTCCACTATCTGCTGACAGACGATATTccagaagaaatacaaaaacccTGGAATACATTTCACAGCCACCTAAAAGGACTTCAAAATCGTATATATTATGCTCTTGAATGGATTTCAGAAGACCTGAGCTACTTTCAAACTGacaaaaatgaagaagaagaggaggttATGAATAAAGAGCTAGAACATCAATACAATCCCAGAAAATGGCTTCTGAGAAAAACCCAAGTGTACGCTGAGTTTTTCTGTGAGAATGATCTGTCAGCCAGCCAAGATCAGGAGTTTGAATCCCCAGATAATATTAGTCCGCTAAGGAGACAAATGAGGATTTACAAACTTGGAGGTGGTAATGTAACTACCATATTTTCAATGTTGTCTGATCAGAAAAATGAAAGGTGTGGGCAAAAACTGGAGGAAATCATAAGTATGTATCTTGATCCACAAAAGCTGGACCTCAGTGACttggcaaattacattttgtgtcaaATTGCATTAGGATGCGTTTCACCTGGGTCCCCCAAACTTGCTACCTTCCGACAGCTTCAGGAACTAAGCTTGCGGTTTAGCAAGGGACGCATTAACACATGTCTCACAAGTGCCTTCTTCCTGCACACTTTGCTGTTCTGGCCCGATGAAATGCAAGACAAAGAGCCAAATGAAAGGAATAATAAAATTCTCATGGCAGCAATTGACAATTTGAAAAGGCTCTATGAGCATAAAATCAAGAATGTTCCTTCAAGAAAGAAGAGAATATTCACTCATTTCTTCCTGGGAAACGGAAACGGCCTTCACAGGATCGTTCACAGAAGCAGGCTGGAGAAGTGCATCAAAGGGTCACTGAATGAAAGGAGACTGAAGTGGCTCAATGGGGAGGTGTGGAAGACCCCAGAGGTCACACAACTGCTGAAACGTGTGGAAGGATGGACCGAGAATGAAAAGCTGTTTGTCTGGGGCAGCTGCAAACACAGCAAGATCAAAGTTATCCCTCTGCATTCTGCTTCGCTGCCTCATATGAATGAAAATGTCTCTTTCTATCTTGGATTTTCCTTCAATGGCCCAGTTGCCCTGCACATTAACTAATAGGTTCTGCTCTACCACAATGACTGCTGTAGATGTGCTATCGTGAATTATACATCTGTGCACAcctattaactttattttaattgcttatgtcatttttatttgttgtacaaaattgtaaaaaataatatataatccCCACTCTCGACCATGTTACTTTTGCACTATGTAATCAACTAAGTTCCCAGTAAGGTAACAcctgtataataaatacaataagttTTGATCTCTAACCATGGATGGTTTTGTTATggacaaatgcatttaattgttgGGTTCCCTTTTTTGATGATATACCAAAGAAATTAACTCTATTCACATCGGGGCTTTGCAACCCTGCTCATTGATAGCAGTAGGATATCTCGGATTTCACTGCAGTTGTGCTTTGAGCTATTTAACCAGTTATTGCCTATTTAGGGTCTGTAGCTATTGATAATATTATACTATCTGTAACCACAGGCCTATGGCACTTCAGTACTGGGGTTGCAGACTGCTGTTCTGTATGTTGAGATAATTGctattgtgttcttgttttacAATCTATATGGAAATGTTGTTAGAACTTATTTTTTACTATTCTGCCATTGTCccatatgttaataaatacattgtacataTTTAA

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway
ko05164 Influenza A
ko05162 Measles

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54650 lncRNA downstream 6152 29119373 ~ 29121319 (-) True G43831
TU54654 lncRNA downstream 9510 29115222 ~ 29117961 (-) True G43834
TU54656 lncRNA downstream 9510 29115222 ~ 29117961 (-) False G43834
TU54497 lncRNA downstream 360119 28676824 ~ 28767352 (-) False G43714
TU54511 lncRNA downstream 388698 28737957 ~ 28738773 (-) True G43725
TU54758 lncRNA upstream 342197 29497710 ~ 29499573 (-) True G43919
TU54896 lncRNA upstream 770870 29926383 ~ 30028230 (-) True G44034
TU54893 lncRNA upstream 783635 29939148 ~ 29944587 (-) False G44034
TU54897 lncRNA upstream 795327 29950840 ~ 30010700 (-) False G44034
TU54905 lncRNA upstream 884692 30040205 ~ 30061634 (-) True AMCG00013384
AMCG00013353 mRNA downstream 13424 29098987 ~ 29114047 (-) True AMCG00013353
AMCG00013347 mRNA downstream 64231 29061888 ~ 29063240 (-) True AMCG00013347
AMCG00013349 mRNA downstream 131091 28991437 ~ 28996380 (-) True AMCG00013349
AMCG00013348 mRNA downstream 138466 28974690 ~ 28989005 (-) True AMCG00013348
AMCG00013339 mRNA downstream 349997 28771933 ~ 28777474 (-) True AMCG00013339
AMCG00013354 mRNA upstream 5717 29161230 ~ 29173911 (-) True AMCG00013354
AMCG00013357 mRNA upstream 22815 29178328 ~ 29202068 (-) True AMCG00013357
AMCG00013358 mRNA upstream 77659 29233172 ~ 29238257 (-) True AMCG00013358
AMCG00013359 mRNA upstream 127151 29282664 ~ 29304026 (-) True AMCG00013359
AMCG00013360 mRNA upstream 284486 29439999 ~ 29440470 (-) True AMCG00013360
TU54456 other downstream 659565 28467312 ~ 28467906 (-) True G43684
TU54344 other downstream 1054684 28068213 ~ 28072787 (-) True G43594
TU54196 other downstream 1558320 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 1834398 27273229 ~ 27293073 (-) True AMCG00013295
TU53964 other downstream 2570147 26556354 ~ 26557324 (-) True AMCG00013264
TU54700 other upstream 97883 29253396 ~ 29254316 (-) True G43869
TU54894 other upstream 851251 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 925523 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other upstream 925523 30081036 ~ 30083345 (-) True AMCG00013386
TU55007 other upstream 1010304 30165817 ~ 30169136 (-) False AMCG00013390

Expression Profile