Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00013356 |
| length | 1320 |
| RNA type | mRNA |
| GC content | 0.64 |
| exon number | 9 |
| gene id | AMCG00013356 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030125.1 |
| NCBI id | CM030125.1 |
| chromosome length | 49972098 |
| location | 29150242 ~ 29156585 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0006397 | mRNA processing | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0090501 | RNA phosphodiester bond hydrolysis | biological_process |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004540 | ribonuclease activity | molecular_function |
| GO:0004674 | protein serine/threonine kinase activity | molecular_function |
| id | description |
|---|---|
| K08852 | ERN1; serine/threonine-protein kinase/endoribonuclease IRE1 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU54489 | lncRNA | upstream | 411489 | 28738123 ~ 28738753 (+) | True | G43712 |
| TU54481 | lncRNA | upstream | 468068 | 28680810 ~ 28682174 (+) | True | AMCG00013336 |
| TU54482 | lncRNA | upstream | 468068 | 28680810 ~ 28682174 (+) | False | AMCG00013336 |
| TU54444 | lncRNA | upstream | 760282 | 28389689 ~ 28389960 (+) | True | G43673 |
| TU54325 | lncRNA | upstream | 1077443 | 28068646 ~ 28072799 (+) | True | AMCG00013317 |
| TU54612 | lncRNA | downstream | 114 | 29156699 ~ 29158493 (+) | True | G43799 |
| TU54679 | lncRNA | downstream | 20466 | 29177051 ~ 29178266 (+) | False | G43853 |
| TU54680 | lncRNA | downstream | 20466 | 29177051 ~ 29178266 (+) | False | G43853 |
| TU54681 | lncRNA | downstream | 20466 | 29177051 ~ 29178266 (+) | True | G43853 |
| TU54684 | lncRNA | downstream | 22513 | 29179098 ~ 29202721 (+) | True | G43855 |
| AMCG00013352 | mRNA | upstream | 28807 | 29115453 ~ 29121435 (+) | True | AMCG00013352 |
| AMCG00013351 | mRNA | upstream | 58635 | 29080000 ~ 29091607 (+) | True | AMCG00013351 |
| AMCG00013350 | mRNA | upstream | 81840 | 29067830 ~ 29068402 (+) | True | AMCG00013350 |
| AMCG00013344 | mRNA | upstream | 90602 | 29033142 ~ 29059640 (+) | True | AMCG00013344 |
| AMCG00013346 | mRNA | upstream | 121034 | 29022007 ~ 29029208 (+) | True | AMCG00013346 |
| AMCG00013363 | mRNA | downstream | 411904 | 29568489 ~ 29573439 (+) | True | AMCG00013363 |
| AMCG00013365 | mRNA | downstream | 429666 | 29586251 ~ 29627558 (+) | True | AMCG00013365 |
| AMCG00013364 | mRNA | downstream | 492916 | 29649501 ~ 29667051 (+) | True | AMCG00013364 |
| AMCG00013367 | mRNA | downstream | 541247 | 29697832 ~ 29710210 (+) | True | AMCG00013367 |
| AMCG00013368 | mRNA | downstream | 565060 | 29721645 ~ 29724010 (+) | True | AMCG00013368 |
| TU54615 | other | upstream | 45665 | 29104289 ~ 29104577 (+) | True | G43802 |
| TU54454 | other | upstream | 661459 | 28484273 ~ 28488783 (+) | True | G43682 |
| TU54319 | other | upstream | 1214304 | 27934074 ~ 27935938 (+) | False | AMCG00013310 |
| TU54201 | other | upstream | 1559424 | 27589139 ~ 27590818 (+) | True | G43476 |
| TU54169 | other | upstream | 1734956 | 27385665 ~ 27415286 (+) | True | AMCG00013298 |
| TU54772 | other | downstream | 484038 | 29640623 ~ 29658948 (+) | False | AMCG00013364 |
| TU54850 | other | downstream | 764482 | 29921067 ~ 29928697 (+) | False | AMCG00013375 |
| TU55045 | other | downstream | 1062325 | 30218910 ~ 30222209 (+) | False | AMCG00013396 |
| TU55098 | other | downstream | 1334242 | 30490827 ~ 30495656 (+) | True | AMCG00013416 |
| TU55111 | other | downstream | 1406783 | 30563368 ~ 30568219 (+) | True | AMCG00013417 |
