RNA id: AMCG00013358


Basic Information

Item Value
RNA id AMCG00013358
length 942
RNA type mRNA
GC content 0.58
exon number 3
gene id AMCG00013358
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29233172 ~ 29238257 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCTTCACACACCTATGAAGATGTCTCCGCAGGTCTGGATTTAGACACGGTCTCGGAGATCGTGTGCGGCTGTGTGGTCTTCAGCCTGGTGGCTTCGGGGAGTGAATCCATCAGCAGCGACGACAATTTCAGGGTCTTCTGCATGTTCACCTGGTGCTTCTTTTTCACCATGTCCTTGCTCATCCTCCTTGTGGAGTTCATCCAGTTCCAGAGCCTGATCCCAGTCTCCTGGAAGAACCTGCCGGTCACCGTGTCCGCCCTGGCCGGGCTGATGACTCTCACAGCCTCGGTGAGCTTTCCCTGGTTCGtggtgaaagaaaacaaagacatcaGCGCCAAGATGATCATGGCCACCATCTTCTCCTGCCTGACGTTCGTGTTCTACACCGTGGAGACCTACCTCCTCAAGTCGCAGGATGCTGAGCAGAGGGGGTACATGGCCAGTGCCCCGGGGCTCCTGAAGACCTTCGAGGTGTTTGGGGGCTGTGTGATCTTCGTCCTGGCCAGCGAGCAGAGGGAGGGCTTCGCCTGGTGGCGCACACTggtttactgctgctgcttcctGATGTCGCTGAGCACCATCGCCGTCATGCTGGGCGACTGCGCCGGACGCTGCCTCCTGCCTTTTGACCGGATCCTAGCCGCCTTCAGCTGCCTCAGTGTCCTGCTGTACACTTCGGCCGCGGTGCTCTGCATCTACGGGTACGTCCAGCCCAAGAGTAAAGACCTGGAGAGACATCTCTTCTGCACTGTCATAACCTTCCTGAACCTGCTGGCCTACTCACTGCATCAGTGTTTCCAGTGCTGGGAGACCTTCCTGCGGGACTGGGAATCGCAGCACACCTGTTCCCGGCGGACTGGGGGCAGAGACGGGCGGGTATCCCCTGAAGGGAAAGCCCTGTCAGGCATCCTCGGTGCTGATGAAAATATGAAGTTTTAA

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54650 lncRNA downstream 111853 29119373 ~ 29121319 (-) True G43831
TU54654 lncRNA downstream 115211 29115222 ~ 29117961 (-) True G43834
TU54656 lncRNA downstream 115211 29115222 ~ 29117961 (-) False G43834
TU54511 lncRNA downstream 494399 28737957 ~ 28738773 (-) True G43725
TU54508 lncRNA downstream 515232 28716291 ~ 28717940 (-) True G43724
TU54758 lncRNA upstream 259453 29497710 ~ 29499573 (-) True G43919
TU54896 lncRNA upstream 688126 29926383 ~ 30028230 (-) True G44034
TU54893 lncRNA upstream 700891 29939148 ~ 29944587 (-) False G44034
TU54897 lncRNA upstream 712583 29950840 ~ 30010700 (-) False G44034
TU54905 lncRNA upstream 801948 30040205 ~ 30061634 (-) True AMCG00013384
AMCG00013357 mRNA downstream 31104 29178328 ~ 29202068 (-) True AMCG00013357
AMCG00013354 mRNA downstream 59261 29161230 ~ 29173911 (-) True AMCG00013354
AMCG00013355 mRNA downstream 77659 29127471 ~ 29155513 (-) True AMCG00013355
AMCG00013353 mRNA downstream 119125 29098987 ~ 29114047 (-) True AMCG00013353
AMCG00013347 mRNA downstream 169932 29061888 ~ 29063240 (-) True AMCG00013347
AMCG00013359 mRNA upstream 44407 29282664 ~ 29304026 (-) True AMCG00013359
AMCG00013360 mRNA upstream 201742 29439999 ~ 29440470 (-) True AMCG00013360
AMCG00013362 mRNA upstream 206190 29444447 ~ 29445872 (-) True AMCG00013362
AMCG00013361 mRNA upstream 207684 29445941 ~ 29449481 (-) True AMCG00013361
AMCG00013373 mRNA upstream 507970 29746227 ~ 29794126 (-) True AMCG00013373
TU54456 other downstream 765266 28467312 ~ 28467906 (-) True G43684
TU54344 other downstream 1160385 28068213 ~ 28072787 (-) True G43594
TU54196 other downstream 1664021 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 1940099 27273229 ~ 27293073 (-) True AMCG00013295
TU53964 other downstream 2675848 26556354 ~ 26557324 (-) True AMCG00013264
TU54700 other upstream 15139 29253396 ~ 29254316 (-) True G43869
TU54894 other upstream 768507 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 842779 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other upstream 842779 30081036 ~ 30083345 (-) True AMCG00013386
TU55007 other upstream 927560 30165817 ~ 30169136 (-) False AMCG00013390

Expression Profile