RNA id: AMCG00013365


Basic Information

Item Value
RNA id AMCG00013365
length 1788
RNA type mRNA
GC content 0.57
exon number 16
gene id AMCG00013365
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29586251 ~ 29627558 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGATCTCCATGGTGACGCTGGAGTCCGATATGTTCGGGCCGCCTGTGCTTTTAAAGAGAGCCGAGGTATTGGCAGACCATCAGGGAACCCACACCCCACTCCCTGCTTGCTTTCTATCCACTGGGCTCATCGGGCTCTTCCTCAATATGAGCACTTCCTGTGCTGAGATGGGCGAGGCAAGGAATCTGATTCCCATGGATCCCAACGGGCTGTCGGACCCCTACGTCAAGCTGAAGCTCATCCCCGACCCCAAGAATGAAACCAAGCAGAAAACCAGGACCATCCGTTCCTCGCTGAACCCCAACTGGAACGAGTCATTCACATTCAAGCTGAAGCCGAGCGACAAGGACCGGCGCTTGTCGGTGGAGGTGTGGGACTGGGACAGGACCACCAGGAACGACTTCATGGGCTCGCTCTCCTTCGGCGTCTCGGAACTCATCAAGTCTCCCGTCTGCGGCTGGTACAAGATGCTAAACCAGGAGGAGGGCGAGTATTACAACGTGCCCATTCCCGAGGTGGACGATCCCAACCTGGAGCTGATGCAGAAGTTTGAGGACTGCCACATTAATATCCACTTCCTCAAGCATCCCCCCATCCCATCCTCCATCCGCTGCCTGGACGGCTCCGTGTCCATCTCCCATCGTCTCACCTGCTCTGCGCCCATGTTGGCCTCACAGCGTAAAGCCCGGCTCGGCCCAGGGAAGAAAGTAATCAGTCCCCCGGAGGACGGCAAGACGAGATTCCCATCGAACAACCTGGACCGGGTCAAACTCACAGACTTCAACTTCCTGGCGGTGCTGGGCAAAGGCAGCTTCGGGAAGGTGATGCTGGCGGAGATGAAGGGTTCAGACCAGCTGTACGCCATCAAGATTCTGAAGAAGGACGTGGTCATCCAGGACGATGACGTGGAGTGCACCATGGTGGAGAAGAGGGTCCTAGCCCACCGGGACAAGCCCCCGTTCCTCACGCAGCTGCACTCCTGCTTCCAGACGGTGGATCGCCTATACTTCGTGATGGAGTACGTGAACGGCGGAGACCTCATGTACCACATTCAGCAAGTGGGGAAATTCAAGGAACCGCAGGCAGTGTTCTACGCAGCAGAGATTGCTGTTGGCTTGTTCTTCCTGCACAAGAAGGGAGTCATATACAGGGACCTGAAGCTCGACAACGTCATGCTGGACTGCGAGGGCCACATCAAGATCGCCGACTTCGGGATGTGCAAGGAGAACATGTACGATGGTGTGATGACCCGGACGTTCTGTGGCACCCCCGACTACATCGCACCCGAGATTATTGCGTACCAGCCCTACGGCAGATCGGTGGACTGGTGGGCCTATGGAGTGCTATTATATGAAATGTTGGCCGGGCAGcCCCCTTTCGACGGAGAGGATGAGGACGAACTCTTCCAGTCCATCATGGAGCACAACGTGTCGTACCCTAAGTCGCTGTCCAAGGAGGCGGTGTCCATCTGCAAAGGACTGATGACCAAGCACCCCTCGAAGCGGCTGGGCTGTGGGCCGGAGGGCGAGCGTGACATCAAGGAGCATGCCTTCTTCCGCAGGATCGACTGGCAGAGGCTGGAGAACCGCGAGATCCAGCCGCCATTCAAACCCAAAGTGGGTGGCAAAGCCGCCGAAAACTTTGACAAGTTCTTCACGCGCACCCAGCCCATGCTGACGCCCCCCGACCAGCTGGTCATCGCCAACATCGACCAGGCTGAGTTCGAGGGCTTCTCCTTCGTCAACCCTCAGTTCATCTATCCTGCCATTCAGAGCGTCATATGA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG:

id description
K02677 PRKCA; classical protein kinase C alpha type

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54727 lncRNA upstream 139553 29434050 ~ 29446698 (+) True G43895
TU54684 lncRNA upstream 383530 29179098 ~ 29202721 (+) True G43855
TU54679 lncRNA upstream 407985 29177051 ~ 29178266 (+) False G43853
TU54935 lncRNA downstream 435850 30063408 ~ 30065492 (+) False AMCG00013382
TU54949 lncRNA downstream 461245 30088803 ~ 30090115 (+) False AMCG00013388
TU55048 lncRNA downstream 714911 30342469 ~ 30343923 (+) False AMCG00013399
TU55072 lncRNA downstream 799066 30426624 ~ 30430649 (+) True AMCG00013408
TU55089 lncRNA downstream 828114 30455672 ~ 30457671 (+) True G44182
AMCG00013363 mRNA upstream 12812 29568489 ~ 29573439 (+) True AMCG00013363
AMCG00013356 mRNA upstream 429666 29150242 ~ 29156585 (+) True AMCG00013356
AMCG00013352 mRNA upstream 464816 29115453 ~ 29121435 (+) True AMCG00013352
AMCG00013351 mRNA upstream 494644 29080000 ~ 29091607 (+) True AMCG00013351
AMCG00013350 mRNA upstream 517849 29067830 ~ 29068402 (+) True AMCG00013350
AMCG00013364 mRNA downstream 21943 29649501 ~ 29667051 (+) True AMCG00013364
AMCG00013367 mRNA downstream 70274 29697832 ~ 29710210 (+) True AMCG00013367
AMCG00013368 mRNA downstream 94087 29721645 ~ 29724010 (+) True AMCG00013368
AMCG00013366 mRNA downstream 105294 29732852 ~ 29741055 (+) True AMCG00013366
AMCG00013371 mRNA downstream 227335 29854893 ~ 29860612 (+) True AMCG00013371
TU54615 other upstream 481674 29104289 ~ 29104577 (+) True G43802
TU54454 other upstream 1097468 28484273 ~ 28488783 (+) True G43682
TU54319 other upstream 1650313 27934074 ~ 27935938 (+) False AMCG00013310
TU54201 other upstream 1995433 27589139 ~ 27590818 (+) True G43476
TU54169 other upstream 2170965 27385665 ~ 27415286 (+) True AMCG00013298
TU54772 other downstream 13065 29640623 ~ 29658948 (+) False AMCG00013364
TU54850 other downstream 293509 29921067 ~ 29928697 (+) False AMCG00013375
TU55045 other downstream 591352 30218910 ~ 30222209 (+) False AMCG00013396
TU55098 other downstream 863269 30490827 ~ 30495656 (+) True AMCG00013416
TU55111 other downstream 935810 30563368 ~ 30568219 (+) True AMCG00013417

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00009382 True 4572 mRNA 0.44 15 NC_007123.7 25640480 ~ 25770232 (+)