RNA id: AMCG00013366


Basic Information

Item Value
RNA id AMCG00013366
length 2872
RNA type mRNA
GC content 0.46
exon number 4
gene id AMCG00013366
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29732852 ~ 29741055 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGGAGGAGGTAGACAGTGCTGTGGCTCCACAGGCTGCTAGCTCCTCGCCTCGTGATGAAAACCAGCCCAGGAGGAGCCCACTACACCATGTGACGAGCCCGAACAGCTCTTCTGTCCATAACGGCACCGCTACAACCGTCCCGCTCGCTCATAACTGCTCCTATTTCAAACACTTCACTTCGGGAGAGGAGGCCGAGATGTTTGAAGTTAAAACCCAGAAAGAGTACAGCATCTCGGCTGCCGCCATCGCCATCATCAGCGTGGGCTTCATGATCCTGGGAACCATCTGCATCCTGGTGTCCTTCAAGAAGGGCATGGACTACCTGCTCAAGCCAGCTGGCATGTTCTTCACCTTCGCAGGCCTGTGCACCATTATCTCGGTGGAGGTGATGCGCCAGTCGGTGAAGCGCATGATCAACAGCGATGAGACCATCTGGATCGAGTACTACTACTCCTGGTCGTTCGCCTGTGCCTGCGCCGCCTtcgtcctcctcttcctcagcgGCATCGCGCTCCTCCTCATCTCCATGCCCCAGATGCCCAGGAACCCTTGGGAGACTTGCATGGACGCCGAGCCGGAGCCCATTGAGTAGCGCCGCCCGGCCCAGCCTGACCCAGGTGCAGCCACAGCCATGGCACCGCCAATCTCATCCTGCACTCCACGTCTACTTAgtcaaaggaaaaacaaaaaaagatctGCTCAAGGATGGCAAGGGAGATGTTGAGCGACAGTGCTAAAGAATAGAACAACATTAATACTCAAAACCTGCAATGAACTGGTGTAATAATTACTTAAAGGTTATatgtctttttttcctgttaatcAACTGTTTCTAACCTGATCGTTGAGCTTTGTTTTGTAGCAGGGGAGCATCTGTCAACCCCTCACACTGACGCGGTGATCTGGTGTCCAGACACACCGCTGTCGTGAAACCTCGTGCCCCCCTACCGTGTCACTCCCTGTCGACGCCGTGCCCCCTCGTCTGGCTGTCCACATCGCAAAAATCGCAGAAGCATCTCGTTCTGCAGCTTGGGGCGACTCTATGAAAGTTATAGCCCTGAAGCATTTTAGTAATACAAATGCGATTTATTTTTGCTTACTTTCCTATCCTTCACTCTCTGTCTACTTCTCTTTTTAAACTCGACACAGATCGCAGCAGCTGTAACGTTACACACTGATTTGAGAAAACGGTGTCAGACGATCACTGCTGCAGCAGAGAGGCTGCCGTCTGCGGCCCATGGACCGGTTCGGTTTTATCTATGGGGGGTGCGGAGCTGAATGCTAATGCCTGGGCTTCAGTAACAACTGAGCACTTGTGAGAGAACTGGACAGCATTCAGTATCTGCAGGTGCAGATACACTGGCACACGATTCAATGGGTTATAAAGTTTCTTTTTACAGGAAACAAGCGGGCgtaattccttttcttttcgAGCCGGCATTAAGAATCACATGGCCATTTTTTGGGGTACTTTTTTAGGCCAGGATttgcaaaaacattaataaaaaaaaaaaattgtttagaTCTGTCAACAGTTTGTGATAAAAGCCGATCCATCcatttggtttgtattttctCATCCTCCGctgaaaagtcattaaaaagcaatatttgaGGGGATATAGGATATTTCCAGTCCAGTCTTCATTTAAATCCTGTCACTGCACCCCCATTATATTGTACACTAACTTGAATATGCATCTCATTCTCCTAGATAACTATCTAGATGTTTTAAAGTGCAGGTTCCAAATGCAGACGATCTTAATTAATTCTATATAACTGAtgaattacttgtttttttgttttccacagcagGTGGAAGCACATCAGGCCGACCACAGGCTGCACGGCAAGTAAATGAGGTGTAAATCACATTAATTAGAGATCAATTAAAAGCTGTAGAAATGTGCTTTACACCTCACTCACCTGTCGTGCAGAATTCAGCTCTGATCTGCAGGTGGGCTTTATTTCCCTCCCCAAAACGCTTTAACAAACATGACTCCTCTGGCTTTCGCTTAGCAAGGTGTCCTGTTGGGATGATTTCCTCCCCCAATGATGTTTCTCTGAATAGATGGGGTGGGAGAGAAGATGCATCTTACATGACCGTATAGAAAGCATAAAAGACGCACAAAGCATTAAACCTGGTTTGAGCAGCTGTATTTTTCTCTCAACGGTTATTTTGGCATGCGACCATACAGAAGTGTATCTTAGTGTAGGAAACCAGCTGTATTTTCTTGTACTGGTCACTGTAATGTATctatgcttttaaatgtatttgtaatggaaataaacacacagagcacaaaCAGGTATTGACAAACTCTCCTCTGAAGCCTCTTGTCTGTGTCACTCCACTCCACTAACTGCAGGGGGGGGAATTGATCAAAACATGCTTTGCTGCctcaaaaaagggaaaagcaaTCAtctcccattttctttttcctgagCTTAAACCAATTACAGTTGATGAGCAGCTAAAACTTTTAGACCCAGAAAAAATTTACAGAAACTTTTAAGCTGAGGGTCAAATCAAGGAAAAGTTACAGCAGCTTTCCAAGGCCAGGTCCTTGTGCTGGATGTGGGAAAGAGGGAAATGTCAGAGAATAATAAACCgaataaagaataaacaaacctgCACTTTCCGAAAGAGGAAACACTGATATGCCGATAGCGTTTTCTTTTTCCATCAGCCTGCAATAAAGGGCCTTGCTGaatcatttataatgtttttgccTTATTCAACCGCAACGCCTTTGTGCGCAGCCAAGAACGCACCTTCACAAATCAAACGCACAAATCGAAACGTACAGAAGACTGTATCCAGGCCCCCCACCTCGCCGCGCGGATGAAAGGGAGAAAGTGTAGCG

Function

GO: NA

KEGG:

id description
K04866 CACNG1; voltage-dependent calcium channel gamma-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54727 lncRNA upstream 286154 29434050 ~ 29446698 (+) True G43895
TU54684 lncRNA upstream 530131 29179098 ~ 29202721 (+) True G43855
TU54679 lncRNA upstream 554586 29177051 ~ 29178266 (+) False G43853
TU54935 lncRNA downstream 322353 30063408 ~ 30065492 (+) False AMCG00013382
TU54949 lncRNA downstream 347748 30088803 ~ 30090115 (+) False AMCG00013388
TU55048 lncRNA downstream 601414 30342469 ~ 30343923 (+) False AMCG00013399
TU55072 lncRNA downstream 685569 30426624 ~ 30430649 (+) True AMCG00013408
TU55089 lncRNA downstream 714617 30455672 ~ 30457671 (+) True G44182
AMCG00013368 mRNA upstream 8842 29721645 ~ 29724010 (+) True AMCG00013368
AMCG00013367 mRNA upstream 22642 29697832 ~ 29710210 (+) True AMCG00013367
AMCG00013364 mRNA upstream 65801 29649501 ~ 29667051 (+) True AMCG00013364
AMCG00013365 mRNA upstream 105294 29586251 ~ 29627558 (+) True AMCG00013365
AMCG00013363 mRNA upstream 159413 29568489 ~ 29573439 (+) True AMCG00013363
AMCG00013371 mRNA downstream 113838 29854893 ~ 29860612 (+) True AMCG00013371
AMCG00013370 mRNA downstream 119909 29860964 ~ 29869372 (+) True AMCG00013370
AMCG00013369 mRNA downstream 135119 29876174 ~ 29883122 (+) True AMCG00013369
AMCG00013375 mRNA downstream 144707 29885762 ~ 29927001 (+) True AMCG00013375
AMCG00013374 mRNA downstream 198100 29939155 ~ 29944680 (+) True AMCG00013374
TU54772 other upstream 73904 29640623 ~ 29658948 (+) False AMCG00013364
TU54615 other upstream 628275 29104289 ~ 29104577 (+) True G43802
TU54454 other upstream 1244069 28484273 ~ 28488783 (+) True G43682
TU54319 other upstream 1796914 27934074 ~ 27935938 (+) False AMCG00013310
TU54201 other upstream 2142034 27589139 ~ 27590818 (+) True G43476
TU54850 other downstream 180012 29921067 ~ 29928697 (+) False AMCG00013375
TU55045 other downstream 477855 30218910 ~ 30222209 (+) False AMCG00013396
TU55098 other downstream 749772 30490827 ~ 30495656 (+) True AMCG00013416
TU55111 other downstream 822313 30563368 ~ 30568219 (+) True AMCG00013417
TU55261 other downstream 1035796 30776851 ~ 30777169 (+) True G44325

Expression Profile