RNA id: AMCG00013369


Basic Information

Item Value
RNA id AMCG00013369
length 2892
RNA type mRNA
GC content 0.55
exon number 17
gene id AMCG00013369
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29876174 ~ 29883122 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgtgtgtgtgtcccgcAGGTATCGGACCAGAAGCCGCTGGGCAGCTGGACGGTGAAGCAGGGACAGAGCGTTGCGTGTCCCGCGGTGTGTAACGGACAAACCGGGGAGTACGTCGTGGTCAGCGACCACAAGGTTCTTCGCGTATGGAAAGATGACGACATAAGTTTTGATAAAGTGTTTAAAGCAACaCTGAGCGCCGATGTGCAGCGGCTCCACGCGGTGCCGGACGCTGAGGCACTGGTGCTGTTCAAGCGGGGCGCAGTCCGGCAGCTGGACACCCTCCTCGCCGCCCCGCAGCAGCCCATCGAGGAGGTGCTGTCAGAGGACGAGGTCATCAGgtggAGCAGCAGCTTCGTGGACGGGGACCAGCCTGGGCTCCTGTTTGTCACGGAGCAGAATGGAGATCACTTCCTGTATCTGCAAAAGCTCCAGCCGAACGTCCTGCACAAGTATCGCATGGAGGCCGAGGGCAACGGTGCCAATCCCCTGAGCTTCGCTGCTCGACTGCAGGACAAGAACATCCGCGTcacgtgtctgtACTCCAGCGGCTGTGTGTTCGAGACGCTGCTGGCTCTGAGCCCTgtgctgggggagggggtgccGACCCTGCCCAGGTCTCTGCTGCTGCGGCTGCCTGTGGAGGAGGGGGTGGTGCCGGCCTCTGCCAGCCTGCTCTTCCTGGACGACGCCCACGTGGCCGTAGTGGGGGCGCCCCACCCGTCCGCCCATGCTGGGAAGGATTTCCTGTGTATCTGGAATCTCAATTtccagaccctgcaggcggcGAAGGAGCTGCCCGGGGGGGTGCATGGACAGCTATGGAGCCATGCGGCGCGGCTGTACGTGTCCCACGGGAAGGCCCTGACCGTGGTGCCCTACGAGTGCGAGGCGTCGTCCCTGGCGGCCGCTGTGGGGAAGCTGAGACCGGCCGGGCCGACAGGAGAAGTGCGGCCGTCCGCTTCCATCCCGTCCTGGAACGCGCTCCTGCACGAAGAGGTTCCCCCGAAAGCATGTAAAGGTGTGGAGACCCGGAAGAGCAAAATGTCCCGGAAGAGCCAAGCGCTGCCGGCCCTGACGGTGGACCAGGTGCTGGAGCGAATACAGAGCGTGTCGcaggaggagctgcagcaggACCTGGGGCTGTTCCTGTCCCGTGCCGGTGAGCCGGAGCTGCAGCTGTCCGTGGGTCAGATCACCACCGGGCTTGTCCGGCGCTGCCTGCAAGAGCCCACCTTCTACCCACAGAGCACCCTGGTGCAGCTGGTGCAGACTGGGCGCCTGTGTCACAGCGTGTGTCCTGATTTCCTGATGCTGGCGTTGAGCAAGAAAGACTACTTCCTCACCCAGCTGTGTCTGCAGCTCTTCCCCGACATCCCTGAGGCCGTCACCTGCGCCTGCCTGAAGGCCTTCCTCAGTGTCATGGATGCCGACCTGGAGGCCGTGTCTGTGGACCTGGGCAGCGTGTCTTTCATGACCGACCAGCCTCCACCCACGGGGCCGGGAGGGGGCGCAGCGGAGCTTCAGAACGGCTTCAGCCCCGCCCTACTGGATGAGGATAGCTGTGACGTCCAGACCCCCACGCTGGGACAGAGCCCGGTGGAGCCCGACCTGCCCTGCCCAGTAGGCCCGAAGAAGGCGGCATTACTAAATGAGATCCTGCAGACGGCGCACAGCGAGAACTTCCTCCTCCCGCCCCTGAAAGACCTGTCAGCCCAGCAAGTCATTCTGCTCCTTCAGTACCTGCAGTTCCTGTATGTTAGATGCTCTCAAGACGTCAACACGCAGCTGCCCGGGTTAAGAACGCCAACGATATCACAGATCCTGGACTGGGTGTGCTTGTTACTGGACGCCCATTTCACGGTCCTGATCCTGGTGCGACTCTTCTCTGAACTGGGCAAGATCCACAGCAGCCTGCAGGAGCTGCACCAGCTGCGCCAGTCCGAGGACATGGGCCTGTACGCCATCGAGGTCATCGAGCTGTTTTAGAGGCGCTGTGCAGACACTTCTTAATAAATCCCTCTGGTTTCTGTACCCCACACCAGCTCCCTGTGTGTGAACTTGTCCCACTCTGCCTAATAGTTAGGCCTTTTAGTACCTTTGCGTTCAGCATCCGGGGAGCCACAGAACCACGGCCCGGCAGGTCCATCGATTCAACCGTTcggtttgttttattctgtgctgGGTTTTCATACTGTTTCCTATAAAGTTTATAGGTTAAAAAAGAATGTACAGTGAAGCTGTGTTTAGATCCTGCAGACATTAATTATTGCAGAGTCCTGTCTGATGTCTATATGAAAAAGCATCCCTTAATACAGTTTAATACCTGAAAACATCCTTTGAAATAAAAaggtcattcatattttaaaaaatattattctggACAAATCAgcatttctttattcttttgtttgtttgtttttaagacgCCTTcattccttttgttttatttgttttttaagtgagTGGCTCAATTTGATGAAGTCTGGAGTCTATCTAatggtgtgttttgttttaagtgtttggAAGTCTGTATCtcaagttacattttattaaaccgttcttaattgtgttttgttagttgtgctgaAGTGTGCAGCTTCAGGTACTCTGTGCTTTATGGGGGTTGAACATACATGTGTTCATGTATAATGATTTAAAACCGAGGCAGCAGCAGCTGACGCCCCCGTAAAATCGTTTTCTATCGTTTCATTGTGACTTAAGAAATGACTTTCTTCTActtcaatttttgtttgtttttatccccGAAACAGTTGTTTGATGTGACAATCCCAAATATCTCATCCtgtcattaaaatgtgatgCTGTTTTGTAGAAAAGGAAACTGAAGACGCTCTTCCCGTTTTCTGactcaataaaaacattttaaagcga

Function

GO:

id name namespace
GO:0030687 preribosome, large subunit precursor cellular_component

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko05166 Human T-cell leukemia virus 1 infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54727 lncRNA upstream 429476 29434050 ~ 29446698 (+) True G43895
TU54684 lncRNA upstream 673453 29179098 ~ 29202721 (+) True G43855
TU54679 lncRNA upstream 697908 29177051 ~ 29178266 (+) False G43853
TU54935 lncRNA downstream 180286 30063408 ~ 30065492 (+) False AMCG00013382
TU54949 lncRNA downstream 205681 30088803 ~ 30090115 (+) False AMCG00013388
TU55048 lncRNA downstream 459347 30342469 ~ 30343923 (+) False AMCG00013399
TU55072 lncRNA downstream 543502 30426624 ~ 30430649 (+) True AMCG00013408
TU55089 lncRNA downstream 572550 30455672 ~ 30457671 (+) True G44182
AMCG00013370 mRNA upstream 6802 29860964 ~ 29869372 (+) True AMCG00013370
AMCG00013371 mRNA upstream 15562 29854893 ~ 29860612 (+) True AMCG00013371
AMCG00013366 mRNA upstream 135119 29732852 ~ 29741055 (+) True AMCG00013366
AMCG00013368 mRNA upstream 152164 29721645 ~ 29724010 (+) True AMCG00013368
AMCG00013367 mRNA upstream 165964 29697832 ~ 29710210 (+) True AMCG00013367
AMCG00013375 mRNA downstream 2640 29885762 ~ 29927001 (+) True AMCG00013375
AMCG00013374 mRNA downstream 56033 29939155 ~ 29944680 (+) True AMCG00013374
AMCG00013379 mRNA downstream 85526 29968648 ~ 29990288 (+) True AMCG00013379
AMCG00013383 mRNA downstream 120774 30003896 ~ 30010694 (+) True AMCG00013383
AMCG00013378 mRNA downstream 128346 30011468 ~ 30015464 (+) True AMCG00013378
TU54772 other upstream 217226 29640623 ~ 29658948 (+) False AMCG00013364
TU54615 other upstream 771597 29104289 ~ 29104577 (+) True G43802
TU54454 other upstream 1387391 28484273 ~ 28488783 (+) True G43682
TU54319 other upstream 1940236 27934074 ~ 27935938 (+) False AMCG00013310
TU54201 other upstream 2285356 27589139 ~ 27590818 (+) True G43476
TU54850 other downstream 37945 29921067 ~ 29928697 (+) False AMCG00013375
TU55045 other downstream 335788 30218910 ~ 30222209 (+) False AMCG00013396
TU55098 other downstream 607705 30490827 ~ 30495656 (+) True AMCG00013416
TU55111 other downstream 680246 30563368 ~ 30568219 (+) True AMCG00013417
TU55261 other downstream 893729 30776851 ~ 30777169 (+) True G44325

Expression Profile