RNA id: AMCG00013370


Basic Information

Item Value
RNA id AMCG00013370
length 1418
RNA type mRNA
GC content 0.55
exon number 6
gene id AMCG00013370
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29860964 ~ 29869372 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGAGTAATGCCCTGAAGGGGGGTGCTAGGCTGCAGAGCGTTGTCCTGGCCTTTTGGTGTTCCTTCCTGCCGAAGTTCTCCATCCACATAGAGACGAAGTACGAGGACAACAAAGGCAGCAACGACCATATCTTCGACAGCGAGGCCAAGGACCTGGAACGGGAAGTGTGTTTCGTGGACATCGCCTACGACGAGGTCCCTGACAGATACTACAAGGAGTCAGAGGACCTCCGCTACTTCAAGTCCGAGAAGACGTCGCGCGGCCTGCTGCCTGAGGGCTGGAGGGACACCCAACAGCCCATCATGTGCTCCTACAAGCTGGTGACAGTGAAGTTCGAGGTGTGGGGCCTGCAGACGCGGGTGGAGCAGTTCGTCCACAAGGTGGTCCGAGACGTCCTGCTGCTGGGACACAGGCAGGCCTTTGCGTGGGTGGACGAGTGGATCGATATGACTTTGGATGACGTGCGGGATTACgagaaacaaatgcatgaaaaaacCAACATTAAAGTTTGCCATGAGCCGCAAGcgctttccacagattctcctTCACTGGATCACATAGAGTGCCATGACCGAGCAAGTGTATGTGACATTTTCCTTATTTCTATGTTACAATAATCTCCTggaccaccaccaccacccctgCCTTGTGTGTCGTCCTCACCAGACTGTCAattcaacacacacagaaacaagttAAAGACAGGtcacaacacacagaaacacgTAAACAGAGAAAGACAGGTCATGACCACTTTAAGATAAAGTGGTGTACACATAGAACAGATGATGTAATGCACGGGTCAGTGGGAGGGAGTTGGTCCACAGTGCCACGACCACTTCAGATTTCGGGTTCTAGGGATGTGGTCTCAGCCAGCATCGGCACAGTGAGGTGGGGAGGGCACAGGCACCCCTGAGGCACACTGGGGATGAGTAGACAAGCAAAGATTAGAAAATACATGTGCATGTGAAGACCTAATCAGAGATCTGAATGAATCTCtctcattctttgtttttttttccttcctccttCTCAACCTCCTGACCGCCCacccaaaaaaactaaacctgcGAAACCACAGACATGACGATGGACGAAGTGAGGGAGTTCGAGAGAGCGATACAGGAGGCCACCAACAAGAAGATCGGGATTTTCCCTCCCGCGATCTCCATCAGCGAGACCGCCCTGCCCTCCTCCACGCGCAGCGCCCCCAACAGCGCCCCCTCCACCCCGCTCTCCACCGAGGCCCCCGAGTTCCTCTCCGTGCCCAAAGACCGGCCCCGCAAGAAGTCCGCCCCGGAGACGCTGACCCTGCCCGACCCGGCGCAGAAGGAGACGCTGTTCCGTCTCCCGTGGTCCTACACCTTCCGCACGCATTCcaccccgcccccaccccccgagTAACCCTgtcccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54727 lncRNA upstream 414266 29434050 ~ 29446698 (+) True G43895
TU54684 lncRNA upstream 658243 29179098 ~ 29202721 (+) True G43855
TU54679 lncRNA upstream 682698 29177051 ~ 29178266 (+) False G43853
TU54935 lncRNA downstream 194036 30063408 ~ 30065492 (+) False AMCG00013382
TU54949 lncRNA downstream 219431 30088803 ~ 30090115 (+) False AMCG00013388
TU55048 lncRNA downstream 473097 30342469 ~ 30343923 (+) False AMCG00013399
TU55072 lncRNA downstream 557252 30426624 ~ 30430649 (+) True AMCG00013408
TU55089 lncRNA downstream 586300 30455672 ~ 30457671 (+) True G44182
AMCG00013371 mRNA upstream 352 29854893 ~ 29860612 (+) True AMCG00013371
AMCG00013366 mRNA upstream 119909 29732852 ~ 29741055 (+) True AMCG00013366
AMCG00013368 mRNA upstream 136954 29721645 ~ 29724010 (+) True AMCG00013368
AMCG00013367 mRNA upstream 150754 29697832 ~ 29710210 (+) True AMCG00013367
AMCG00013364 mRNA upstream 193913 29649501 ~ 29667051 (+) True AMCG00013364
AMCG00013369 mRNA downstream 6802 29876174 ~ 29883122 (+) True AMCG00013369
AMCG00013375 mRNA downstream 16390 29885762 ~ 29927001 (+) True AMCG00013375
AMCG00013374 mRNA downstream 69783 29939155 ~ 29944680 (+) True AMCG00013374
AMCG00013379 mRNA downstream 99276 29968648 ~ 29990288 (+) True AMCG00013379
AMCG00013383 mRNA downstream 134524 30003896 ~ 30010694 (+) True AMCG00013383
TU54772 other upstream 202016 29640623 ~ 29658948 (+) False AMCG00013364
TU54615 other upstream 756387 29104289 ~ 29104577 (+) True G43802
TU54454 other upstream 1372181 28484273 ~ 28488783 (+) True G43682
TU54319 other upstream 1925026 27934074 ~ 27935938 (+) False AMCG00013310
TU54201 other upstream 2270146 27589139 ~ 27590818 (+) True G43476
TU54850 other downstream 51695 29921067 ~ 29928697 (+) False AMCG00013375
TU55045 other downstream 349538 30218910 ~ 30222209 (+) False AMCG00013396
TU55098 other downstream 621455 30490827 ~ 30495656 (+) True AMCG00013416
TU55111 other downstream 693996 30563368 ~ 30568219 (+) True AMCG00013417
TU55261 other downstream 907479 30776851 ~ 30777169 (+) True G44325

Expression Profile