RNA id: AMCG00013372


Basic Information

Item Value
RNA id AMCG00013372
length 2094
RNA type mRNA
GC content 0.51
exon number 10
gene id AMCG00013372
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29796583 ~ 29803243 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCGTGGGTCCTTCGCTACGTTTAGGCGGCCTCCGCAGCTGCCTTCCCATTGGTCGCGCCTGTCAGCTTCCGGTTGGCGACACACAGCAGTCGGAAGTGGCAGCCAGCGCACGGTGGGAAGCGCACAGAGCGGTTGGATTTACCTGCAGGTTTACCGGTTTGTTATTGTCCGAGATCCCCTTGCAACGCTGCGAAAATGGCCGAATCGTCGGAGAGAGCGGACGGGAAGATCGTGAAGATGGAGGTGGACTACAGCTCGGCCGTGGAGCAGCGCGTCCCGGAGTGCGAGAAGATGGCCAAAGCATCGGACATGGTGTCCACCTCCCGCATCCTGGTGGCCATTGTGCAGATGTGCTACGAGGCCAAGGACTGGGACACCCTGAATGAGAACATCATGCTGCTGTCCAAGAGGAGGAGCCAGCTGAAACAGGCTGTTGCCAAGATGGTGCAGGAGTGCTACAATTACGTGGACACGCGCGCCCGGCTGACCAAGACCCTGGCCAACATAAAGGAGCAGAGTGGAGAAGTGAAGGAGGCTGCGGCGATCCTGCAGGAGCTACAGGTTGAGACGTACGGCTCGatggagaagaaggagaaggttGAGTTCATCCTGGAGCAGATGAGGCTGTGCATCGCAGTCAAAGACTACATCCGCACGCAGATCATAAGCAAGAAGATCAACACCAAGTTCTTCCAGGAGGAAGGGTCAGAGGATCTGAAGTTGAAATACTACAATCTAATGATCCAGGTTGATCTACACGAGGGGTCCTATCTCTCCATCTGCAAACACTACCGTGCCATTTATGACACCCCCTGCATCCTGGAGGACAGTGCCAAGTGGCAGCAGGCTTTAAAGAGTGTGGTTCTGTATGTAATCCTGGCCCCCTATGACAACGAGCAGTCCGACTTAGTTCACAGAATCAACACTGATAAGAAACTGGAGGACATTCCCAAATACAAGGATCTGCTGAAGCAGTTCACCACGATGGAGCTGATGCGCTGGGCGGCCCTGGTGGAGGATTATGGGAAGGAGTTGAGAGAGGGGTCTCCCGACAGCCCGGCCACAGACGTGTTCGCGTACACGGAGGAGGGCGAGAAGAGATGGAAGGACCTGAAGAACAGAGTCGTGGAGCAtAACATACGGATCATGGCCAAGTACTACACACGCATCACCATGAAGCGCATGGCTGGACTTCTGGACCTGTCTATCGATGAGTCGGAGGAATTCCTCTCCAGCCTGGTCGTCAGCAAGACCATCTACGCCAAAGTGGACCGGATGGCCGGCGTCATCAACTTCCAGCGGCCAAAGGACCCCAACGACATCCTGAACGACTGGTCGCACAAACTGAACTCGCTCATGTCCCTGGTGAACAAAACCACACACCTGATCGCCAAGGAGGAGATGATTCACAAccttcaataaaacataataaaacgaATCCCTCGATCCGAGTTTGATTAAAGGACAATGTGTTTCGGAGTGTCGTCCGGGTGGGAGAGGCGACGCTGGCCTTGCGCAGGTCATTCCAGCTTAAAGTTGCGTTGCGTGGATGAGACCGGCGCCCGGTCCTTGTTTCCTTAGCGGTTATTGTAAACCTGTTGTAGTTTTCCATATTTCTAATTTtttaatcgtttttttttttttaagaagatgCAGGAAGAATAAGTCTGATCTATTTTCTCCCCAAAACCCGATCCAGCCTGTATCTTAAAGGTTCCCCTGAGACCTGGCAGCATTTGGACTGTGTTGGTTAACTGTCCCGTCATTATTTTGTACCTCATGCATGTATGCTAGCGTGGCTGTCGCCCACAGATGGGGCGTACGTGTCTTTTGTGTTCTCACAGGTTTGACATGTAACCGTCATGATAAGGGATGTAGTTACGTGTGACACAAGCAATATGTGCTGTATTAAAAGACTGCTTGTAACTCTGGGTGACTTTGTTTTTTGGGGTCTAACGAATATTTCTGcgttattaataatactaataaacatTCACACTTTCGTAAAACCAAGGAGGGTTTTAACATTTGTCCAGGCCTGGCCTTTTCTGGATTACGATCTGTTggtttgctgtgtgtttgggttttttCTG

Function

GO: NA

KEGG:

id description
K03035 PSMD12, RPN5; 26S proteasome regulatory subunit N5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54758 lncRNA downstream 297010 29497710 ~ 29499573 (-) True G43919
TU54650 lncRNA downstream 675264 29119373 ~ 29121319 (-) True G43831
TU54654 lncRNA downstream 678622 29115222 ~ 29117961 (-) True G43834
TU54656 lncRNA downstream 678622 29115222 ~ 29117961 (-) False G43834
TU54511 lncRNA downstream 1057810 28737957 ~ 28738773 (-) True G43725
TU54896 lncRNA upstream 123140 29926383 ~ 30028230 (-) True G44034
TU54893 lncRNA upstream 135905 29939148 ~ 29944587 (-) False G44034
TU54897 lncRNA upstream 147597 29950840 ~ 30010700 (-) False G44034
TU54905 lncRNA upstream 236962 30040205 ~ 30061634 (-) True AMCG00013384
TU54958 lncRNA upstream 285560 30088803 ~ 30090147 (-) True G44086
AMCG00013373 mRNA downstream 2457 29746227 ~ 29794126 (-) True AMCG00013373
AMCG00013361 mRNA downstream 347102 29445941 ~ 29449481 (-) True AMCG00013361
AMCG00013362 mRNA downstream 350711 29444447 ~ 29445872 (-) True AMCG00013362
AMCG00013360 mRNA downstream 356113 29439999 ~ 29440470 (-) True AMCG00013360
AMCG00013359 mRNA downstream 492557 29282664 ~ 29304026 (-) True AMCG00013359
AMCG00013376 mRNA upstream 128407 29931650 ~ 29935170 (-) True AMCG00013376
AMCG00013385 mRNA upstream 188057 29991300 ~ 30002882 (-) True AMCG00013385
AMCG00013384 mRNA upstream 239347 30042590 ~ 30047619 (-) False AMCG00013384
AMCG00013386 mRNA upstream 277371 30080614 ~ 30083441 (-) False AMCG00013386
AMCG00013389 mRNA upstream 288619 30091862 ~ 30100704 (-) True AMCG00013389
TU54700 other downstream 542267 29253396 ~ 29254316 (-) True G43869
TU54456 other downstream 1328677 28467312 ~ 28467906 (-) True G43684
TU54344 other downstream 1723796 28068213 ~ 28072787 (-) True G43594
TU54196 other downstream 2227432 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 2503510 27273229 ~ 27293073 (-) True AMCG00013295
TU54894 other upstream 203521 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 277793 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other upstream 277793 30081036 ~ 30083345 (-) True AMCG00013386
TU55007 other upstream 362574 30165817 ~ 30169136 (-) False AMCG00013390
TU55119 other upstream 485049 30288292 ~ 30290867 (-) False AMCG00013405

Expression Profile