RNA id: TU54850


Basic Information

Item Value
RNA id TU54850
length 3654
RNA type TUCP
GC content 0.42
exon number 3
gene id AMCG00013375
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29885762 ~ 29928697 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cGACAGGCTCACAAGATGGCCTGGCCTTTCCTGGAACCTGTCGACCCCAATGACGCGCCAGATTATTACGGGGTCATCAAAGAACCAATGGACCTGGCAACAATGGAAGAGAGGGTGATCAAGCGATATTACAACAAGCTGACAGAGTTCGTGGCAGACATGACCAAAATCTTCGACAACTGCCGCTACTACAACCCGAGCGACTCGCCGTTCTACCAGTGCGCCGAGGTTCTCGAGTCGTTCTTTGTACAGAAGCTcaaagctttcaaagcaagCAGATTGTGATGTCATAACTGTCTGACCTTATAACTGGAATCTGAGCTggatgctggggtcacacttttattttgtatcatggAACCTGCTGTTTCATAAACAGCGTAAATTCTGCTTTGTTAAGAgacaaaaagttatttaaatcctttctttttttaaataaaataataaaaatttgcaacagccttaaaaaaaaaaaaagatctccAAAGATGCCTCCCGTGACAATCGCACCGCGGCAGCCATGTTGACAACCATGTAACAGTCCGTTCAGTCCAGggatgtgtgttgtgttcttgtttttttctgaataaatgCGACAGACCGTTAAAATATTGAGTATCAAGGGGAAAGCAAAGGAAGAAAACTGTTTATAAAGCTGAACATGATAGAACCTCCAGCTCAATAAAGTAatggttgtgtttgtttaaggGTGTGTTGCCAGAGTGAGGTATGTGTACAGGAAGGGGGGGCAGCGACAGCGCACGTGTTCATTTCAGTGGGAAGTGTCGCTCGGGTTTTTATTGACGAGCGACGAGCCCATTCCCCGTCTCTTAATCACCTCGATCCTcatcatattaataatgttagTAATTGTCCTTTTGTGGATATTTTAAGATGTTACAGCCTCAGGCACGGCAGCTTTCGAATGCTGCAAAGCTTTTAAATCCTTTTGTGAAGGAGCCGCCTGcgtttgcatttgaaatggtAATAGGAAACATAATAAAGTAGCTTTCGATATTCTAAACACACAAGCTGTCTTCAGAAGGCAGGGCTGTGTGCGCAGGGTTAGAGTAGGGAGGTCAGGTACCCTCGGAGATTTGCAAGTTGCTCTCCAACATGGCTGCTGGTTGCCTGTACAATTGGCTGACCCACCTGTCCCAACACCAGCACCACCAGCGCCCTGGCATCCTGTGCTTTgctttggtttttgtttgtttattctgtctCTCTAAAGATGATAAAGGGATACTCAACTGTTCCCTCTTTCCATATTCTGTAGGTCTCATAACAACAAACTACAGACTACAGCTTCTTAGGAAATGCACATCTGTTTGCTCTCAGTCTAATACAGCGAGAATCTGGTCACCAGAACATTTTCCCGTGTCGGGACCAGGCCTCTTCTCCTTCATCATCCTCTTCTCTGCAGCTCGGGCCCCCCTCCccgcccccttcccctcctccactgaGAGGAAAGTCTCTCCCCCCCGAACCAGCGTCCTCTGCAGAGCGCCATTGGACTGTCAGAGAGGACAGACAGGCCGGTGTCCGGCCGTCTCTGAGCGCCTCTGTGGACATTGAAGTGTGACCGGGGGCAGGGTTTCAACCGAAGAGAGgacatgtttttggttttgtttgtttttccaaatcAAAAGAGGACAAGAAGAACTAATAATGATAAAAGAACTGCAGTTCATAAGCTGGTGATCATGCCTGACGGGGGGATGAGAAATAATGCATTCTGGgagctgtatttattgtttaggTAATTCAGACTTTTGTATTAAATCCTGTTCGTCaacttttttgatttttttgaatttttatttttatttttgtttcccccctgaTCAAATCAGATCTCACTCAACCGTTACAGCAGCTTCTGTCCCCCCCCCGTGACATCTGTAGTTGAAAACACCACCCCACCCGCCCTTTCTTTGTTCGAAAGGAACGGATAACGAGTGAAGCGATGTCCGGGGATCTACAAGGGCTCTGTGGGTAAGGTAGTCCGGACGGGCCGCTCGCTTGGGGGTCTGGCGCTGGCCTTGCGAGAGACGGTATAAGTGTAGGCGTAGTCGGCAGGatccacacccttcatttgaagtCGTTTTTCAGTCAGcgtttcctttattttcctgCGTTTTGTTCTTTAACTGTAATTATGTCATCTCTTTTGTGTTGCCTGTGTTGAACACGGATTTGGACCTGGAAACGCTGATTAAATTCAGAACCTGGTTGGGGGGGTGTAAGCGGTGCAGCTCCATCGTTGATTGGTTTCTCCATATTGTCTGTTCAGCCGAATGAGTCGCTGAATCACATTCAAATGACGGGTGTGGACACCTCCCGCTGCCACTGTGTAACTGACCCTCCAGGGACGACCGACTGAAAAACCTGAAGAGCTTTGTGTATTGAAGGCATCTTGTTTGTAAAACTTTtgtccgtttttttttttttttttccgtttttgttcgtttgtttgttttttcagttttttgtattacagctcaaaaaatattgatgtatatgaaacaaaaataaacggGACAGTCCATGTTCCCTTCCACACTGAGAGCGGCGTCTCTGGAAGTCCTTAATTGTAGGATATTTGTTAATTAACGCTTTTTTCCAAATCTGTTccggggaaaaaatacaaaactgatgAATGAGAAACTGAAACGATTTGAGGAAATGATAAAGGGCATGTTGAACCTAAATGTGATGCGGTCGGTTTTAGTTTTTGCACAAATTCATTTTCAGACAGTGATTTTCCcctaacacccccccccaccccacagtgCAACACATACTTGGCCAGTTTCATTATAACAGGGCTGTTGTACCAGGGCTTTACCCAGTGAATGAagacaatgttttcttttttctttttttcttggagCAGTTTGTGgaaaaattctaataaaattctgccttattttttctttgaaatttgaattttaatttgaaatatatttttgaatacataaaataaatactttttccaTCCATTGTTCAGTTGTGTAGCCCTTGCCTACAGGAAATTATAGTAAAACCTTCCCTTCAGTTCCCTGTGTAAATGAACCAATGACCCTGGCAGACTGATCAATAGACGTGTCTTTGTTTTACCGAATCAGTCCCTAGTAGAGTTCACTTTATTCCagccctttttttttcttccccgaGACCTTGTGGGAGCCTCTCGGCTCACCTGACATGAGCCTTGATTCGGTTTGGAATCCAATTTGCATTTAGGTGAAAATTGCCCTTTATGTTCAAAAGAAACTGCTGCATATTGTTTGCCTATTGATGAAAACAcaagggggtgtgtgtgtgcgtgtatatatatatatatatatatatttatatacactctGCAGTGAGTTCTGTGAAGACATGAAATTAACATTCTGCACATCTCATCACAGCACCAcagtatttctgtattatttattcatatctaTGGAACTTTATTCATTTTGagtaaaaatgttgaaaaataataatgaaaagcgaaaaaaaaaacactttcctacTAGTAGGGAATAGATGCTCTCTATGTTTTTAACAGATTGTTGATAACTCTAAAGAgttcttctttcttttgtacTTGATAGGACATTTCATCCTAGATAATAAAGTAATGTTTTTGACATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54727 lncRNA upstream 474369 29434050 ~ 29446698 (+) True G43895
TU54684 lncRNA upstream 718346 29179098 ~ 29202721 (+) True G43855
TU54679 lncRNA upstream 742801 29177051 ~ 29178266 (+) False G43853
TU54935 lncRNA downstream 134711 30063408 ~ 30065492 (+) False AMCG00013382
TU54949 lncRNA downstream 160106 30088803 ~ 30090115 (+) False AMCG00013388
TU55048 lncRNA downstream 413772 30342469 ~ 30343923 (+) False AMCG00013399
TU55072 lncRNA downstream 497927 30426624 ~ 30430649 (+) True AMCG00013408
TU55089 lncRNA downstream 526975 30455672 ~ 30457671 (+) True G44182
AMCG00013369 mRNA upstream 37945 29876174 ~ 29883122 (+) True AMCG00013369
AMCG00013370 mRNA upstream 51695 29860964 ~ 29869372 (+) True AMCG00013370
AMCG00013371 mRNA upstream 60455 29854893 ~ 29860612 (+) True AMCG00013371
AMCG00013366 mRNA upstream 180012 29732852 ~ 29741055 (+) True AMCG00013366
AMCG00013368 mRNA upstream 197057 29721645 ~ 29724010 (+) True AMCG00013368
AMCG00013374 mRNA downstream 10458 29939155 ~ 29944680 (+) True AMCG00013374
AMCG00013379 mRNA downstream 39951 29968648 ~ 29990288 (+) True AMCG00013379
AMCG00013383 mRNA downstream 75199 30003896 ~ 30010694 (+) True AMCG00013383
AMCG00013378 mRNA downstream 82771 30011468 ~ 30015464 (+) True AMCG00013378
AMCG00013381 mRNA downstream 87526 30016223 ~ 30024254 (+) True AMCG00013381
TU54772 other upstream 262119 29640623 ~ 29658948 (+) False AMCG00013364
TU54615 other upstream 816490 29104289 ~ 29104577 (+) True G43802
TU54454 other upstream 1432284 28484273 ~ 28488783 (+) True G43682
TU54319 other upstream 1985129 27934074 ~ 27935938 (+) False AMCG00013310
TU54201 other upstream 2330249 27589139 ~ 27590818 (+) True G43476
TU55045 other downstream 290213 30218910 ~ 30222209 (+) False AMCG00013396
TU55098 other downstream 562130 30490827 ~ 30495656 (+) True AMCG00013416
TU55111 other downstream 634671 30563368 ~ 30568219 (+) True AMCG00013417
TU55261 other downstream 848154 30776851 ~ 30777169 (+) True G44325
TU55551 other downstream 1976271 31904968 ~ 31911801 (+) True AMCG00013468

Expression Profile