RNA id: AMCG00013376


Basic Information

Item Value
RNA id AMCG00013376
length 2455
RNA type mRNA
GC content 0.59
exon number 5
gene id AMCG00013376
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29931650 ~ 29935170 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGATTAGATAGCTGTTCTCCCTGATGGGGGCCCCGCCTCCAAAGGGGGGCGCGAGCGACGTGCCAGAGCTCCCCCACAACAACCAAAGCAGAGCGGTCGCCAGGGATCCGCCCCCCCCGGCCAACGACCTCCTCGAGGCGGCTGGCAAGCAGGTGGAGTCCAAGTATGCCCAGCAGCTGCTGCCCCCCGAGCCATGGCACAAACACGCAGGGCTGGCCCCCCCCCTGCCACGGCCCGGCAACAAGGGCAAGAAACCGGGCAAGATGGAGCGGCTGCCCAGTGAGCACAACAGCGAGAAGAGCCGGGGCGGCGAGGGCCACACGCAGGCACCTGACAGCCTCGCCAAGCCCGCCCTGGCACCCGCTACCAACCGCACGCAGAGGCCGGCGCAACCCGAATCGGCCTCACCCAACACGGCCGCCTCCTCAGAGCCGGACACCCGCCCCCATGCCAACCCCAGCCCCAATGCCCACAACCCCAGTGCCCGCGCCCGGGGGCACTCTCCCCCCTCGCCCACGAAGAGAGACCCGCCCCCCGCCGGAAGGAGGATGGACCCCGAGGAGAACCGGCCAGGGAAGACAGGCGCCACGCAGCTGGGTGGCGGCCACAGGAATGGCAGCAGGGCCTCCATTACCTCCAACCGCCGCTCCTCCAGCCTGCTGTACCAGTACGACATCCTGAAGAGAGAATCAGAGTACAGTCAGGAGGCCGTCTGCCTGAGCGAGTGCCgcaaggagaaggaggagagagagcacTTCTGCTACAGTGAATTCGCGATCAACGGCATCGTGCACGACATCGAGAGCCTGCGCCGGGGGATCCGCCTCGTCACGCTGCTGGTGAACAGTGACGGCTTTTACCGCATGAGCCGCCTCTACGTCACCCCCGACGGGTTCTTCTTCAAGGTCCGCCTGCTGGTGCTGGACACCTACAAGTGTGCCAAGCCCTGCCCAGACCTCAAGCTCGGGAGCCGGTACATTGTAATGGGCCAGATCTACCACAGGAGGCGCCACCTGTCCAGCGAGCTCCTGGCCCTGCTGGCGGGACGCCTGAAGCCGGGAGACGGACTCATCCGCAGCAACAGCTACGTCAAGAGGTTCAACAAGAGGCGGGACGGAAAGGTGCAGGAGGCGGTGCGCACCAGGTGCCGGTGAGAGGGCCCTGCTGCACCGGCAGAGACACGGCGCCCTGCGGCACGGATCCGTATCTACCAACTAGTCAgactaaaaacacaaacagagctgCCCTGTCTCTGAATATGGGGGGCAGCACCATCAGCCACGGACCCCGCCGGCGTTCTCTGTCCACGCTCTGTCTTTGTTGGGAGGGTTGTTTCTGCTTCGTTAGCTTTTAAAAATCGACCAGGGCCTGCAGCCATAGGGAACAGCAGCGCCGTTCAGAACACAGGAAGCGACACCGGCTCGTCTGTTTATATGCACAACCGGAACAAAAACGTAcaagatgttatttatttttatttttttcaaacagaaaaaggTACGATATGAATTTAGAAACCCGATGCTGGAGCATCCCCCCTCCCCTCGTTTCCAGGCTGTCCCACAGCTCTGCAGGTCGCTCTGTTCATTGTATCGTTGTCCTTCGCTGTATatattgccatttatttttatatccagtTTGTAGGGCCTGTTGTGTGGATTTACAGAAGGGTGTCTGTATTGATGGAAACTTGCAGGAAGCGCTGGGAGTCACTGTTGACTTTGTGACAAGCAGGGGGGAGAACAGACAGTCCTTTCTCATGTACGCGAGTGTAAATACTGCACTgcctgccctccctccctccttttattttctcttatcaGTATTCAGGAAATGCACTGTTatgtttaaaaagagaaaacagcATTTACCAAAACGTAACGTTCCCCAGCAGAGGTTATTTCCTGCGGCTCTAATGATGTGCGTGCGCCGAGATGTTTCCCCAGGCGGCGGCTTCAAAGCGAGTGGGGCGGAGGGAGGGTGTTTGTGGAAGGGTGACTGTAAATCAGGCCTCGGGAACCCAATCCGCCGCGCACCTGGACCGCTGGCACCGGCACTCGGCGCGGCCCTCGGAGGCGGCAGGAGAGGCCCTCCCGGCCGCACCCCTCCTGGCCTGTTTGCTTAAGTACAGTGACTCCCCAGAGAGCAGGACTCAAAGGAAGCATTAGAGAGGAGGGTGGGGGAAGTAAAGAGGGAAAAATGGATCGTGAAAGGAAGCGGGGCAGAGAAATCCCTCGAGGGCGTGGggtttttttctgtgttgttgttccTGTTGTCGGttcttctccctcccctctcgAGGAGAAGTCTTTAAAGCGCACATGCATGGTCTCTGGCCCCCAGACTCACTCCCCTGGGCGGAGGGCTGGGTGAACGCGGGGGCACTGTGTACAGGCTGAGTCTAAGTAAggaatttattaaaacatgttttttacaggtttttttccctca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54758 lncRNA downstream 432077 29497710 ~ 29499573 (-) True G43919
TU54650 lncRNA downstream 810331 29119373 ~ 29121319 (-) True G43831
TU54654 lncRNA downstream 813689 29115222 ~ 29117961 (-) True G43834
TU54656 lncRNA downstream 813689 29115222 ~ 29117961 (-) False G43834
TU54511 lncRNA downstream 1192877 28737957 ~ 28738773 (-) True G43725
TU54893 lncRNA upstream 3978 29939148 ~ 29944587 (-) False G44034
TU54897 lncRNA upstream 15670 29950840 ~ 30010700 (-) False G44034
TU54905 lncRNA upstream 105035 30040205 ~ 30061634 (-) True AMCG00013384
TU54958 lncRNA upstream 153633 30088803 ~ 30090147 (-) True G44086
TU55012 lncRNA upstream 238322 30173492 ~ 30175306 (-) False AMCG00013390
AMCG00013372 mRNA downstream 128407 29796583 ~ 29803243 (-) True AMCG00013372
AMCG00013373 mRNA downstream 137524 29746227 ~ 29794126 (-) True AMCG00013373
AMCG00013361 mRNA downstream 482169 29445941 ~ 29449481 (-) True AMCG00013361
AMCG00013362 mRNA downstream 485778 29444447 ~ 29445872 (-) True AMCG00013362
AMCG00013360 mRNA downstream 491180 29439999 ~ 29440470 (-) True AMCG00013360
AMCG00013385 mRNA upstream 56130 29991300 ~ 30002882 (-) True AMCG00013385
AMCG00013384 mRNA upstream 107420 30042590 ~ 30047619 (-) False AMCG00013384
AMCG00013386 mRNA upstream 145444 30080614 ~ 30083441 (-) False AMCG00013386
AMCG00013389 mRNA upstream 156692 30091862 ~ 30100704 (-) True AMCG00013389
AMCG00013391 mRNA upstream 182630 30117800 ~ 30126501 (-) True AMCG00013391
TU54700 other downstream 677334 29253396 ~ 29254316 (-) True G43869
TU54456 other downstream 1463744 28467312 ~ 28467906 (-) True G43684
TU54344 other downstream 1858863 28068213 ~ 28072787 (-) True G43594
TU54196 other downstream 2362499 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 2638577 27273229 ~ 27293073 (-) True AMCG00013295
TU54894 other upstream 71594 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 145866 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other upstream 145866 30081036 ~ 30083345 (-) True AMCG00013386
TU55007 other upstream 230647 30165817 ~ 30169136 (-) False AMCG00013390
TU55119 other upstream 353122 30288292 ~ 30290867 (-) False AMCG00013405

Expression Profile