RNA id: AMCG00013378


Basic Information

Item Value
RNA id AMCG00013378
length 1676
RNA type mRNA
GC content 0.59
exon number 9
gene id AMCG00013378
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30011468 ~ 30015464 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGAATACGTCATCGGAAGTCGCCCGTCGCCCGTGAAGTGATAGAAGCGTGAGCGGCTGGAGGCGCCGGCCTGCGCTGCAGCGACCCTCTGTGTGAACGCGTTAGCACAGCCCGGGGTTATTAGATGTACAGATCCATTGCAAATCCGTCGTTTTATTTCCTGGATGCCTTTGGAGTTGCCGCAGCCGGTGGCGTTTCCGTCACAGTAGCGCAAGACACCAGCCATGTTGACCTACTCCATGCGGCGGTACCTGGGTGCTGTGACCAGGCGGCTGCAGGTGGGGGCAGGGGAGCAGGGGAGACGAGGCTGCGCAGACTCTGCATCTGCGAGGGACGACCCCGAACACACCCGCACTCtgctgcagctctgcgcagCCAGGCACTTCACAGCCGGGGAGCCGGTGGACAGGGAGTCCGTGCTGAGTGGCCGACTCGGTTACGGCCCCCTCGGCACGGAACTGAAGAAGAACCTTCTGCGGCAGTGGTGGCGCTCCGTGGTGGCTTCCAGGGCGGAGGTGCTGGGGATCAGCTCGCCCCACCAGTGCCAAGGCAGACCCGCGTCTGGGTCTCTGAGGCTGGTGGACGGCGAAGCTCTGTCCAGTGTCCTCAGGCAGAAGGGACTGAGCACAGAAGGACTCGCCAGGGAGGTGGAAAGGACCCTGAGGGAGAGCGCGGTGCTGAGGACCACCCTGCTGCCAGGTGCCCTGGACCAGTACATGGCCTCGCTGGAGCTGGTGAACAAGAAGCTGCCCTTTGGCCTTGCAGAGATGGGGGTGTGCTACTTGCCCCCTGGGGGGCACAGCCCAGGGGCCGAGGTGACGGAGACATCGCTGGTGTGGTTCTGCTCGCCCCGCACGGCCGCGCAGTGGCTGGACTACTGGGTCCGACACCGGCTGCAGTGGTGGAGAAAGttTGCTGTAGGTCCATCTAACTTCGTCAGCGCTGATTTCGAGGAGGAGGGGGACGGGGGGGTGGAGAGGGCTGTGCGGGGGGCCCGGCTGCTTGGGAACATGGACCGGGCCATGCTGGCCTACCTGCACGACTCTCTGCAGCAGCAGAAGAGGGTGGACAGCAGACAGAGGCTGCATCACAGGAAGGTGCTGAAGCTCCACCCTAGCCTGGCCCCAGTGAAGGTGGCTCTGGACATGAGCCGGGGACCCACAGTGGAGCTGCGCCAGGTGTGCGAAGGGTTactgcaggagctgctggacAGGAGCATATCGGTGTGGCCTGGGTACCTGCAGACCCTGCCGTCCTCCCTGGAGCAGCTGCACAAAAAGTACGATGAGATGGGCGTGCTGTTCACAGTGCTGGTCAGCGAGGCCACACTGGAGAACGGCCTGGTGCAGGTCCGTAACCGCGACACCACTGTGCGCGAGATGATGCACGTGTCCGAGATAAAGGACTTCCTGGTCAAGTACGTCACAGAGTCTACAAGTGACTGATAACAATATTATTGTTGTCGTTGATGTGCAAACAACATGTTTTGCACATTATCTCGTCAGTAATTTTCTTATAGAAATTAAGTACACTGTAATCATACAGAGTGTGAATGTTACCTTTGTTTAATTGCATATCTCTAAGCTggctgaaatgtaaataaaaatgattgttttgGCCTACttgtgatgtttttcttttttgcatccTCTGAAGTGAGTAGCAGAACAAGAAG

Function

GO: NA

KEGG:

id description
K02333 POLG2; DNA polymerase gamma 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54727 lncRNA upstream 564770 29434050 ~ 29446698 (+) True G43895
TU54684 lncRNA upstream 808747 29179098 ~ 29202721 (+) True G43855
TU54679 lncRNA upstream 833202 29177051 ~ 29178266 (+) False G43853
TU54935 lncRNA downstream 47944 30063408 ~ 30065492 (+) False AMCG00013382
TU54949 lncRNA downstream 73339 30088803 ~ 30090115 (+) False AMCG00013388
TU55048 lncRNA downstream 327005 30342469 ~ 30343923 (+) False AMCG00013399
TU55072 lncRNA downstream 411160 30426624 ~ 30430649 (+) True AMCG00013408
TU55089 lncRNA downstream 440208 30455672 ~ 30457671 (+) True G44182
AMCG00013383 mRNA upstream 774 30003896 ~ 30010694 (+) True AMCG00013383
AMCG00013379 mRNA upstream 21180 29968648 ~ 29990288 (+) True AMCG00013379
AMCG00013374 mRNA upstream 66788 29939155 ~ 29944680 (+) True AMCG00013374
AMCG00013375 mRNA upstream 84467 29885762 ~ 29927001 (+) True AMCG00013375
AMCG00013369 mRNA upstream 128346 29876174 ~ 29883122 (+) True AMCG00013369
AMCG00013381 mRNA downstream 759 30016223 ~ 30024254 (+) True AMCG00013381
AMCG00013380 mRNA downstream 17947 30033411 ~ 30045500 (+) True AMCG00013380
AMCG00013377 mRNA downstream 30774 30046238 ~ 30061553 (+) True AMCG00013377
AMCG00013382 mRNA downstream 47916 30063380 ~ 30074748 (+) True AMCG00013382
AMCG00013388 mRNA downstream 68180 30083644 ~ 30090117 (+) True AMCG00013388
TU54850 other upstream 82771 29921067 ~ 29928697 (+) False AMCG00013375
TU54772 other upstream 352520 29640623 ~ 29658948 (+) False AMCG00013364
TU54615 other upstream 906891 29104289 ~ 29104577 (+) True G43802
TU54454 other upstream 1522685 28484273 ~ 28488783 (+) True G43682
TU54319 other upstream 2075530 27934074 ~ 27935938 (+) False AMCG00013310
TU55045 other downstream 203446 30218910 ~ 30222209 (+) False AMCG00013396
TU55098 other downstream 475363 30490827 ~ 30495656 (+) True AMCG00013416
TU55111 other downstream 547904 30563368 ~ 30568219 (+) True AMCG00013417
TU55261 other downstream 761387 30776851 ~ 30777169 (+) True G44325
TU55551 other downstream 1889504 31904968 ~ 31911801 (+) True AMCG00013468

Expression Profile