RNA id: AMCG00013379


Basic Information

Item Value
RNA id AMCG00013379
length 5128
RNA type mRNA
GC content 0.53
exon number 20
gene id AMCG00013379
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29968648 ~ 29990288 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCTGGAGCCTGTACTACTCACCGAGTCGTCATGCGTGTGATGTGCGTGAGGGCATCCAGCGGGCCTTGTTCTGCGCACCTCCCAGCTCCTCTATGCTGTGTGCAAAGAACCTGGTGAAGAAAGATTTCTTTCGGCTCCCGGACCCCTTTGCCAAGGTGGTGGTGGACGGCTCGGGACAGTGCCACTCAACTGACACCGTGAGGAACACGCTGGACCCCAAGTGGAACCAACACTACGACCTATACATTGGGAAGTCGGACTCCATCACCATCAGCGTGTGGAACCACAAGAAGATCCACAAGAAGCAAGGAGCCGGGTTCCTGGGCTGCGTCCGACTCCTGTACAACGCCATCAACCGCCTCAAAGACACTGGCTATCAGAGACTAGACCTCAACAAGCTGGGCCCGAACGACAACGACACTGTGAGGGGGCAGATAGTCGtgAGCCTGCAGTCCCGCGATCGCATCGGCACAGGTGGCCCGGTGGTGGACTGCAGCCGGCTGTTCGACAACGACCTGCCAGACGGCTGGGAGGAGCGTAGGACCGCCTCCGGACGCATCCAGTACCTCAACCACATCACGCGCACCACGCAGTGGGAGAGACCCACGCGGCCGGCCTCGGAATACTCCAGCCCAGGGCGGCCGCTCAGCTGCCTGGTGGACGAGAACACGCCCATCATGGGCACCAACGGGGCGTCCAGCGGGCAGACTGGAGACCCCCGCGCCCAGGAGCGTCGTGTCCGGTCGCAGAGGCACCGGAACTACATGAGCCGCACACACCTGCACACCCCGCCGGACCTGCCCGAGGGCTATGagCAGAGAACCACACAGCAGGGCCAGGTCTACTTCCTCCACACGCAGACGGGCGTCAGCACGTGGCATGACCCCAGGGTGCCCAGGGATCTTAGCAACGTGAACTGCGAGGAGCTGGGGCCCCTGCCACCCGGGTGGGAGATCCGCAACACTGCCACGGGCCGGGTCTACTTTGTGGACCACAACAACCGCACCACTCAGTTCACCGACCCGCGGCTCTCCGCCAACCTGCACCTGGTGCTCAACAGTCCGAAACCTAATGGTTCCCGTGTCGGCATCGAGAGCCATAACTCTAACCTAAGTCGTCAGAACCAGCTGAAGGACCAGCAGCCGCCGCTGCCCCCCCAGGTGCTGGTGTCCCCCAGCCAGCTGCCCGAGGAGGCTGAGTGCCTGACGGTGCCCAAGTACAAGCGGGACCTGGTGCACAAGCTCAAGATCCTGAGGCAGGAGCTGTCCCAGCAGCAGCCCCAGGCCGGGCACTGCCGGATAGAGGTGTCCCGGGAAGAGATCTTCGAGGAGTCCTACAGGCAGGTGATGAAGATGAGGCCGAAGGACCTGTGGAAGAGGCTGATGGTGAAGTTCCGGGGGGAGGAGGGTCTCGATTACGGAGGGGTGGCCAGGGAGTGGCTGTACCTCCTGTCCCACGAGATGCTGAACCCATACTACGGCCTGTTCCAGTACTCCCGGGACGACATCTACACCCTGCAGATCAACCCCGACTCGGCCGTCAACCCGgagCACCTGTCGTACTTCCACTTCGTGGGGCGCATCATGGGCATGGCGGTGTTCCACGGGCACTACATTGACGGCGGCTTCACACTGCCCTTCTACAAGCAGCTCTTGGGGAAGCCCATCACCCTGGACGACATGGAGTCGGTGGACCCCGACCTGCACAACAGCCTGGTGTGGATCCTGGATAATGACATCACCGGGGTCCTGGACCACACCTTCTGCGTGGAGCACAACGCGTATGGCGAGATCATCCAGCATGAGCTGAAGCCCAATGGCAAGAGCGTCCCGGTGACCGAGGACACCAAGAAGGAATATGTCAGGCTGTACGTGAACTGGCGCTTCCTGCGGGGCATCGAGGCGCAGTTCCTGGCTCTGCAGAAGGGCTTCAACGAGGTCATTCCCCAGCACCTGCTCAAGTCCTTCGACGAGAAGGAGCTGGAGCTGATCATCTGCGGCCTGGGCAAGATCGACATCAACGACTGGAAGTCCAACACGCGGCTGAAGCACTGCACGCCCGACAGCAACGTGGTCAAGTGGTTCTGGAAGACAGTGGAGTCGTACGACGAGGAGCGCCGCGCCCGGCTGCTGCAGTTCGTCACCGGCTCGTCACGCGTCCCGCTGCAGGGTTTCAAGGCACTCCAGGGTGCCGCCGGCCCACGGCTCTTCACCATCCACCAGATCGACGCCAGCACCAACAACCTGCCCAAAGCGCACACCTGCTTCAACCGCATTGACGTCCCCCCGTACGAGACCTATGACAAGCTGAGCGAGAAGCTCCTGACAGCCATCGAGGAGACCTGTGGCTTCGCCGTGGagtgagaggggaggggaggggtgggggcCATGCCCCCAGGATACGCCTGCCCCCCTACACCACAGAGCAGGGAGCGGACCACCGGGAGCTTCACTTGGTTTccttcgtgtttttttttttttgtcccattttatgttattttttatatatatatatgtgtttaaaatgagaaaatggaaACAGAAGAGATCTGGTCCCCTGGCTTTAGCCACGTGATGGTTTCTTTCAGCTGCTAAAACTTGACTCCGACATTGACCTTTGACCCGGACTCTTCAGGCGACTGGTTTGTGACTTTGAGAGTGAAGACAGTATTCTACTTTTCCTTTTGTCTGTATTATGATTTTAGAtgcattctcacacacacacactgacactgatatACACACGAAAAAGACTACTATTGTGAAAAttgtcagcatttttttttttattctgtgttaGTCTCCAACCCCCctgctggggtgggggggtgccaGCTATACAGTGCCCCTGGGCATGCACGTCCTGtgcccccctgccctgctgctgcagagctCAGACCTGCGCTGCCGTCGCTGTTTGCACCCACGCCTGTGGACCCtggcggggggcggggggggcagggcagggcagggcagacTGATCCCTGGAGGGTAAATAgacccctccccaccccctccccgtCGAGTTCCCTCAGGGGTcgccagagagacagagaaggcTGTGCTTCACTCGACTCCACAACtgtttataatacatatatccTCAGCAACTGTAAAATCTGCAAACTGTTAAAAATGGCTTGAataatcttatttttatatcacagggaaattaatacaaatatatatattattgccATAATTCCAGAAACCTACAACAGAGCAGAACTCACTTTTGAATTGTCTtctacaatgttttaattttgaaactgTAGATTTTTGAAAGAACTTGAAGCTTGAATAAGGTTCCTGTTTGGGGTTTTATATctatacaattgttttaattctgctgtTCTTGAAGCACGGACATCTTTACCCAAATCCACTTCCTGATTTCAGATCTGTCACCACTATCACTTCAGTTCTATTGAATTCAGTCATATGTAGTTTGACTTGGGCTCTTTCAGTGcgtttgttctttatttttctttaatttggaaACCCACATCAATCAGGAAACGGGACCCCCACGGCCCTGGCATGTCTGTAAGAGACGCACACCGCGGTTGTAGGAGTGTGACCCCCGAGTTTGGGGGCCCCGGGTGAGAGGCGATGTCGCAGTTGGCAGGGACTGGTGACGTTCGAGCACTTTAAGacgtgttgggggtggggggcgttACTCGGGCACCTTGCCTGAAAGGGACCGGTCTTGTTACTGCGCCGTTCTTCATTGGACATGCATAACACATGCCTATAACCTGTgactatatgtatgtatgtatgtaggtatgtatgtataaatctatatattttgtatatggcTTCTCTCTGCCCCCCAGTTCCAGGCATCACTGACCTCAGGTGgtgtgccccccccaccctggcCTATATTCCCTTTAACCGAAACCCGTCTGACACGCTCTGCTGGGACCTGCACCCCCCTGCGGACCGGGCCGCTGGGTGTCGGCTGTTCGCATCAGACATGGTttagggaggggggggtggctgTGGACCAGACTGTGGTGCCCCCCCCGCTTTGGCCTCGCAACAGAACACTGCAAGGACTCGGCTCACTATGGACTGGTTTTTAATGTAAACTGTACTTACATGTTGACTTGCAGCTTCTGATGAACTGTGTTGTTTAACAGAATctgtaagtatatataattgttttaaggtttgttttttgtttttgtttgctgccTGTTTATAGCAAACCTGTTATGACCATGGGACTGTTCTTAACACAgtttgcatacacacacacacgtgtatttttccatcttttatttcctttgtacttcaaactgtgtgtgtgtatgcaaagTTTCAACTGTTTAGCCTCTGCATAAAGAGACGGATGAATCCTGAGACGGTGCTTTGTACAGAATATAGATATTGTTCATATATGTCCAACATGCATCCTTTAATTTATCTTTAActtaaacataaaatcaaaagacgaaaaaaccaagaaaacattttgcacactTAAGGACTTAAGttgctgaaatggaaaaaaagggCAACTTGCATCTGTTGACCGATGGTGCGTCCGCTCTCCCAGACGCGGTCGCACACCACAGTGCCCTGGCTGGGGCTGGGCCGAGCGGAGGCACGACTCTGCTCTCGTGTAGGAGCCGGTTTCGACCCTCAGCCGTCGACGGATCTATTCGCACCCCGAGACGAACAGACCGACACATTCgtgctcctcctcttcctcatcgcTGACCAGTGCAATCTGTTGTACATAACACTTcgacttttgtttttttatagagTACTGATTCTGTGTGTAATTAGCTCATTAAACTCGTCTTTCTATTCTCTTGAATCTCTGCCACCATGTCTTTGTTTTCTCCTCGGCCTCGTCTGTATTTATTAGTGTGTGTATCGTGCTCAAACCAGCTGCATCTTTCCACCCATGCTGTTTTATGAGCTTCAACAATAACACCTGTatgaaaaatgattttatatatataaatgtgtgtatgtatgtatgtgtgtgtatatatatatatatatatatatatatatatatacacacgtgtgtatgtatgtatgtatgtatgtatatatatatatatatatacatacatacaactcTTTAACTTGTACCCATGCA

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0045121 membrane raft cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K04678 SMURF; E3 ubiquitin ligase SMURF1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54727 lncRNA upstream 521950 29434050 ~ 29446698 (+) True G43895
TU54684 lncRNA upstream 765927 29179098 ~ 29202721 (+) True G43855
TU54679 lncRNA upstream 790382 29177051 ~ 29178266 (+) False G43853
TU54935 lncRNA downstream 73120 30063408 ~ 30065492 (+) False AMCG00013382
TU54949 lncRNA downstream 98515 30088803 ~ 30090115 (+) False AMCG00013388
TU55048 lncRNA downstream 352181 30342469 ~ 30343923 (+) False AMCG00013399
TU55072 lncRNA downstream 436336 30426624 ~ 30430649 (+) True AMCG00013408
TU55089 lncRNA downstream 465384 30455672 ~ 30457671 (+) True G44182
AMCG00013374 mRNA upstream 23968 29939155 ~ 29944680 (+) True AMCG00013374
AMCG00013375 mRNA upstream 41647 29885762 ~ 29927001 (+) True AMCG00013375
AMCG00013369 mRNA upstream 85526 29876174 ~ 29883122 (+) True AMCG00013369
AMCG00013370 mRNA upstream 99276 29860964 ~ 29869372 (+) True AMCG00013370
AMCG00013371 mRNA upstream 108036 29854893 ~ 29860612 (+) True AMCG00013371
AMCG00013383 mRNA downstream 13608 30003896 ~ 30010694 (+) True AMCG00013383
AMCG00013378 mRNA downstream 21180 30011468 ~ 30015464 (+) True AMCG00013378
AMCG00013381 mRNA downstream 25935 30016223 ~ 30024254 (+) True AMCG00013381
AMCG00013380 mRNA downstream 43123 30033411 ~ 30045500 (+) True AMCG00013380
AMCG00013377 mRNA downstream 55950 30046238 ~ 30061553 (+) True AMCG00013377
TU54850 other upstream 39951 29921067 ~ 29928697 (+) False AMCG00013375
TU54772 other upstream 309700 29640623 ~ 29658948 (+) False AMCG00013364
TU54615 other upstream 864071 29104289 ~ 29104577 (+) True G43802
TU54454 other upstream 1479865 28484273 ~ 28488783 (+) True G43682
TU54319 other upstream 2032710 27934074 ~ 27935938 (+) False AMCG00013310
TU55045 other downstream 228622 30218910 ~ 30222209 (+) False AMCG00013396
TU55098 other downstream 500539 30490827 ~ 30495656 (+) True AMCG00013416
TU55111 other downstream 573080 30563368 ~ 30568219 (+) True AMCG00013417
TU55261 other downstream 786563 30776851 ~ 30777169 (+) True G44325
TU55551 other downstream 1914680 31904968 ~ 31911801 (+) True AMCG00013468

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051369 True 3399 mRNA 0.49 20 NC_007114.7 25281947 ~ 25369557 (-)
grasscarp (Ctenopharyngodon idella) CI01000034_00486238_00516732.mRNA True 2918 mRNA 0.52 19 CI01000034 486238 ~ 517524 (+)