RNA id: AMCG00013381


Basic Information

Item Value
RNA id AMCG00013381
length 3130
RNA type mRNA
GC content 0.56
exon number 15
gene id AMCG00013381
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30016223 ~ 30024254 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCGAACGTCGCTGGATAAAAATGGCCGCCGAGAAGCACAGCGAGGCCCTGGTAGCCGGAATGGACGAAAACAAGGAGAATAAGCCCGACGAGGGTCTGGGGCTGGAGATCCTGCAGATTATCAAGGAGTCGCAGCAGCAGCACGGGCTGAGACATGGGGACTATCAGAGATACAGGGGCTACTGCTCCCGCCGACTGCGGCGCCTGAGGAAGACACTGGGCTTCAAGATGGGCAACCGGCACAAGTTCACTGGGAAGAAAGTGACTGTGGAGATGGCGGCCAAGCGCAGCGAGGAGCTGGAGCGGCTGTGCGAGAGCCCCAAGGTCGACGCCAAGACCAAGCTGGAGGCACAGGCCTATACCGCATACCTAGCTGGCATGCTGTGGTTCGAGCTGCAGGAGTGGAAGTCGGCCATGGAGGCATTCAACAAGTGCAAGACCATCTATGAAAAGCTGGCCAGCGCCTTCACGGAGGAGCAGGCCGTGCTCTACTACCAGCGGGTGGAGGAGATCTCCCCCAACATCCGCTACTGCGCCTACAATATCGGTGACCAGAATGCCATGAATGACCTGATGCAGATGAGGCTGAGTGCCGGGGGGGGAGGAGGCATGATCGCCGAGAAGCTAGAGGCTCTGATCACTCAGACCAGAGCCAAGCAGGCTGCCACCATGAGTGAGGTGGAGTGGCGCGGCCGCACTGTCCCGGTGAAGATCGACAAGGTGCGCATCTTCCTGCTGGGGCTGGCAGACAACGAGGCAGCAATCGCTCAGGCGGCCAGCGAGGAGACGAAGGAGCGTCTGTACGAGACTCTTCTGGCCGAGTGCCGGGACTCCATCCAGGCCGTCCGCGAGGAGATCAAGGCCGACTCAAAGCAGCGGGAGAGAGCCATGGACACTGACACGGGGAAAGTCTCCAACCTCCAGTACCTGCACAGcTACCTGACCTACATCAAGCTGTGGACGGTGGTGCGGCGCAACGAGAGCATGGCGCAGGCGCTGCACGCCAAGCTGAAGGAGCCGCAGCCGGACGAGAGCCGGAGGGGCCCACGGCCCCAGGACCTAATCCGCCTGTACGACCTCATCCTGCAGaGCCTGGCAGAGCTGTCTGGGCTGCAGGGCCTGGAGGAGGACAACAGCTTCCAGAAGGAGGTGGCCCTGAAGACGCTGGACCTCCCTGATGTCCAGGAGCTGATCTCGGAGGTCAATGCGGAGAAGTACTCCCTGCAGGCAGCGGCCATCTTGGaCACCGGGGACGCTGCCGAGACACCGTCGCCCTCGCAGGTCCGAGAGACCAAGCCTCTCTGCGAGCGACTGGACACCTTCCGCCTGGACCCCGCCCTGGTGGGGAAGCAGCCCAACCTGGTGCAGTTCCCCCCAGACTTCCAGCCCATCCCCTGCAAGCCCCTGTTCTTCGACCTGGCCCTGAACCACGTGGCCTTCCCTCCGCTGGATGACAAGGTGGAGCAGAAGGGCAAGGGCGGCCTGACCGGCTACATCAAGGGCATCTTCGGCTTCGGCAGCTAATCCGGGCCCAGGCTCCGGCAGCGACCTGGGACTCCCAGCTCCCGGCCCTAGGCCCCTGCTGATCTGCGCGGGTCCCGGAGCACAGCCCAGTTCTCAAATTCCCCCTGAGCTCTGGTTCTGTGTTCTGTCGCTTGTTAATTCCCCCCCATCGTCCTCCCCATCGTCCCCCAGTGCTCGGGGTGGTCACAGTTAGATAGTATCTCAGATAATCTCAGTGAAAATAATACCCTTCGGTTTACAGTCTCACGTCACATGCTGAGGGTGTCTGTGTTCAGCACCGCCTCGCAGCGTTTCACCAACATCAGTCCAGATGCAGCAGACACAGCTGGCTTTGTTACCATCGCGATCTGGATAGGAGTTATAAACAAACGTATCGAagggtggtgtttttttttttaatcatcttgTTGGACAGACAACTATGAGTGGTGTAAAGGCCAGATTTTCTCAGACTGTTTAATTTtaagagaaacacattttaactcTCGATAAACACAATGTACTCCAGCACGTTTCGAGAACAGCTGTCCGCCATGCAACCGGGAGCCATTCGGATCTGCAAACAGCCAGGCGTTGGCAATGCAGCCGGTATTTTGGGCGTAGCAGCAGATTAATTGTCTAGAAAAATTTATCTTGGGATGTGTTGGAAAAAGTgggagtgtttttgttgtgtgtgtgtgtatgtgtgttcacCATGGCGTAAGCAACCTCACCGTTGCGTCAAAATACTGCGTCAGAGGCTCGGGAAGGGAACCGCAGCCCATTCAACCCTGTTTTGGGTGAAAGTTTTCCTTCagagttttaaaatgcaacaggAAGAGACAACTGTACTCTACTTGGCATCTGTTAAGAAGCTGTGGgggaaataaatgtgtaaatctcCTGGTAGAgtccacacactcactcactcactcactcactctgccCCGTGCTGTCCACCGTCTCTCCCTTGTTTAGGTACGCGTGGCTCCACGGGTCCCCCCCCGAGTGGCTACCTGCCCTGGGCTCTGCTGGCTTCTGCCCCTCTGTAAGAAGCAGGTGTTGGTGCCCCTCCGTGGTCTGTCCAGCATAAGCCTGTCCATCATGTCAAATAACCAAAACACCTTTCTGGAGAGCCAGTCTTACCTAATTACTGACTTCTTTACTGGCCTCTTGCAATCTGTTCAAACCCTTCtggcaacattattattattattattattattagtagagttttttttcccctctactcccctcccctccccgtCAGCCCGTGTCCtggcagtgttttttttgtcacaatTTGCCCAGTGGCTCCAGCAGCCCAGCTGGACACCTGAGTCCCATCGTCTCCCTTTGCTGCATCGTTTGTCCAGAAGGCACATGTGGTGAAGGGTCCCCTGTGTGTCCGGTCAGCGCGGCGCTCTCGGGGTGGTGGTGCGCTGCTCACAAATTGGATGTCACCATTTgggatttttaaatgaaatttcaCTCTTGAATAACTTAATGGATGCTGGAAGAACAGTCAGTTCATCAATGTTTGTCATAACTGAGAGGGACGACTGTCCAGAACCGACACCAGGATTTGTACTTTCCcattgagaacaaaataataatgataatcaaa

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K03107 SRP68; signal recognition particle subunit SRP68

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54727 lncRNA upstream 569525 29434050 ~ 29446698 (+) True G43895
TU54684 lncRNA upstream 813502 29179098 ~ 29202721 (+) True G43855
TU54679 lncRNA upstream 837957 29177051 ~ 29178266 (+) False G43853
TU54935 lncRNA downstream 39154 30063408 ~ 30065492 (+) False AMCG00013382
TU54949 lncRNA downstream 64549 30088803 ~ 30090115 (+) False AMCG00013388
TU55048 lncRNA downstream 318215 30342469 ~ 30343923 (+) False AMCG00013399
TU55072 lncRNA downstream 402370 30426624 ~ 30430649 (+) True AMCG00013408
TU55089 lncRNA downstream 431418 30455672 ~ 30457671 (+) True G44182
AMCG00013378 mRNA upstream 759 30011468 ~ 30015464 (+) True AMCG00013378
AMCG00013383 mRNA upstream 5529 30003896 ~ 30010694 (+) True AMCG00013383
AMCG00013379 mRNA upstream 25935 29968648 ~ 29990288 (+) True AMCG00013379
AMCG00013374 mRNA upstream 71543 29939155 ~ 29944680 (+) True AMCG00013374
AMCG00013375 mRNA upstream 89222 29885762 ~ 29927001 (+) True AMCG00013375
AMCG00013380 mRNA downstream 9157 30033411 ~ 30045500 (+) True AMCG00013380
AMCG00013377 mRNA downstream 21984 30046238 ~ 30061553 (+) True AMCG00013377
AMCG00013382 mRNA downstream 39126 30063380 ~ 30074748 (+) True AMCG00013382
AMCG00013388 mRNA downstream 59390 30083644 ~ 30090117 (+) True AMCG00013388
AMCG00013387 mRNA downstream 140800 30165054 ~ 30167818 (+) True AMCG00013387
TU54850 other upstream 87526 29921067 ~ 29928697 (+) False AMCG00013375
TU54772 other upstream 357275 29640623 ~ 29658948 (+) False AMCG00013364
TU54615 other upstream 911646 29104289 ~ 29104577 (+) True G43802
TU54454 other upstream 1527440 28484273 ~ 28488783 (+) True G43682
TU54319 other upstream 2080285 27934074 ~ 27935938 (+) False AMCG00013310
TU55045 other downstream 194656 30218910 ~ 30222209 (+) False AMCG00013396
TU55098 other downstream 466573 30490827 ~ 30495656 (+) True AMCG00013416
TU55111 other downstream 539114 30563368 ~ 30568219 (+) True AMCG00013417
TU55261 other downstream 752597 30776851 ~ 30777169 (+) True G44325
TU55551 other downstream 1880714 31904968 ~ 31911801 (+) True AMCG00013468

Expression Profile