RNA id: AMCG00013382


Basic Information

Item Value
RNA id AMCG00013382
length 3777
RNA type mRNA
GC content 0.66
exon number 30
gene id AMCG00013382
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30063380 ~ 30074748 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAGAAGCCGGAAGTAGGGTTTTCCCGGTGAGAACAGCCGCCCGAAAGAGCAGCCGCTCGTTGCAATGGAGAGCAGTTAACGGTCAGTGGCGCCGGCTCTTGCCTCTCTGTATGTGAACACAtccagagggagagaggtagGATTTCTGACAGAAATACCGCATCTCCGCCGGGtaccagtggaaacagggcgACGCTACTCACCCGAGCAGCGGCGTGAGGGTCTGGCATGgcTTTGAAGCTGAAGAAAGGAGGGAATAGCTCCTTCAGTGATGTCATCAGTGACCTGTTAGGGGACAGTGATGAGCCCCCCGTCAAGGGCAGGTCTCCAGCGTGGGGCGGTGGCCCAGGGAGAGCTGGGGTCCTGCCGTCCCGCAGTGGGAAACGGTCTTTGCTGGACGATGACTTCTTCAGCAAGCTGGCAGAGGAGGCTGGCGATGAGGAGGTCTCTGACGTCTCCGAGGCGGACCCCCTGGCGTTGCTGGAAAGCTTGAAGGACATGGATGACATGGAAGCCGACTTGTTGAGCAGGAAGAAGCCGAGCTCCGCCCCCAGCCAGACCTCAGCAAAGGCTTCTGGGGGCAGGGGGCCAAAGGGAACGCAGGACACGCCTCCTGGACCCGGGGACAGGCCCGGGGGTCAGGGAGCAGGTGGGGGGCCAGGTGAGGACTCCATGGCCGAGGTCAGGAAGCCCAGCTCTGCCCCGCCTGCTCCCGCCACCCGCAGCTACAAGAAGTTCAGCTTCACCGACAACGAGGATGATGGCAACGCCAACCTTCTTGGCCTGAACCCAGACGGGGAAGGGCCGGAGATAGCTAGGGATCCTGCAGCCCCTGACCTGCACAACAAGAGTCTGAGGGGAGCTGTGCAGGCCGGACCCTCACGGCTGTGTGCGACTGCAGCTCTTTACCTGTGTCCTgATGTGGACGACCCCTTGGCCGACTTTCTGGATGACCTAGATGAAAGGAAGGACTCCAAGCCCGGTCCGTTGGAGCGAAAGCCCAGTCCCCCCGAGACGCCCAGTGCCAGAGAACAGGAGACCGGTCAGTGTGCCTCGGGGAACGGCCATGGTTCCAGGCCACAACACAAGCATTCACCTCTCGCTGCCCTGACCCCCAGCAGTGAGCCCCCCGTGCCCGCCAGGACCCGGCTGGACGAGATCCTGGGCCGTGGCACTGCCCCCCGGCTCCTGGAGCGCCCCCTCACTGGCGAGAGGAAGGAACTGCAGCCGGAGAAGAGCGCGGGCCCAAAAGATCCTGGGCTGGGGGAGGATGACTTCACCTTCGGGGCCTACCAGCCCACCATGGCTTCCACCCCCGAGGGCCGGCAGTCCCGCAGGCAGTCCGTCAGGTTTTCCACGGAGGACGTCAGCGGGCTGTCCCCAGACCGGAGGTCCAAGCCCTCCACCCTGGCCACCACCCCGGGCTCGGCGCGTGCTGGTAAGACTGCGGCGGATTGGCTGGGGCTCaaacaggaagaggaggagccaGAGGAGGAGCCCTTCCCCACTCCCCCCAGCCCCTCCCCGGGCATCAAGTCCCCCGCCAGCCGCCCCCCCTCAGGAGTCAAGACCACCGACctccccgcccccgccccctcccACTCCTCCTCCGCTGCCAAAGCCAGCCAATCTGCAAGCAGGCCGGGGGTGTCGATCAcccaggaggaggaggaggattgGCTGGCAGGAGCTCTGACCAGGAAGAGGTCTCAGGGGGCGgcgagggaggagaggaaggaggagaagagCTCTGCCCAGCAGGAGCACCTGGGGCTGGGAGAGGAGGTGGACCTGGACTCGTTCCTTAGTAAACGCAGCCCCTCACCGGCTGCCAGGAGACGAGCTGCGGACACGGTGGACCCCAGCAAGGAGCCCAGCTCTCCTTTGCCATTGGAGACGCCTCGTCAGCAGGCCATGCCCCCGCAGCCCGGTGGGCGGGGCAGAGAGGAGAAGCCCACAGCTGCCGTCCATGGCAACCATCACCCGAACACCCCCCCGCTGTGGTGCCCAGCGCAGTGTGGTGTAGTTACGGCACAGAGACCGGTGGAGAGCAGCACGCCACCCCCCCAGCCACAGGCGCCTCTCTCAGCCGACAGCCTTCAGCAGCTCCTCCTGCAGTCACAGCTGGCGCAGTCCCAGCTGTGGGGGCGAGGGGGCGCTGTGGACCTGGCCGCCCTGCAGAGGCCGCCGCGGGGCAGTGAGCAGCTGGCGGGGGAGGAGGCCGTTCAGAATCGCATCGCACAGCTGGAGGGACAGGTGCGGAAGCTGCAGCTGGAGCTGGGACAGGCCCAGATGCTGCTGGAGAGCATgcagcagagacacagacaggacaCTGATCTCATGGAGAGCACACACAGGGCACGGGtgcagctgctggaggaggCGGCTGTGCAGCGGGAGGGGTGTCTCAGGCACGAGAGTGAGGAGCTGCAGGAGCGTGTGGCCAGCCTGGTCCGGCTCGGGGAGCAGGAGCGGGCCGAGCTGCAGGCCCAGTACCAGCGCCGCCTGGCCCAGGCCCAGCAGGAGAGGGACCGCGAGGTGGAACGGCTGCGTGACCTGCAGAGGAAGGCCATCCTGGAGATGAAGAGGGAGCACGAGGAGCAGCTGGCGCGCCTGAAGCGGCTCAAGGACGAGGAGGTGGACGCCGTGACCAGCGCTACCTCGCAGACGCGCTCCCTGGCCGGGGCCATCGAGCAGATGGAGCAGTTCTCGTGGCGGCTGGGAGAGCTGGCCTCCCGTGTGGAGAGCAGCCATGAGCACAGCACCCAGGGGCTGGAGCAGGGGGCGCGGCAGCGGGACCAGCAGCTCCGAGtgctgcAGGATCGcctggagcagcagcagaaggaCACGGAGGGGGAGCGATCGCGGCTGCAGGAGGTCATCGCCAGGATGGAGGCGCGGCTGTCCGAGCAGCAGAGGCAGCTGGAGAaggAGCGCTGGAGGGTGTCCGCAGAGCAGGCCAAGGCCGAGGCGTCCCACAGGGcgctggaggaggagagacgCACACTGACCCAGAACATCGCCATGGAGAGGGAGGAGCTGCAGAGGGCAAAGagcGCCCTGCTGGAGGAGCAGCAGGCGGTGATGACGCGCTGTGCCGAGGAGCGCCGGCGGCTGGCGGCCGAGTGGGCAGAGCTCCATGCGCAGGACAAGCTGCGGCAGGAGAGGACCGAGAGGGAGAGCAGCCGGGCACTGGAGAGGGATGCCCACCGGGAGGGCACCATCATCAGCCTGGCACAGGAGCAGGCAGAGCTGAAGCTGCGGGGGGCAGAGCTGCGTCTGCGTGAGGAGGCGCTGCTGGCGGCGGAGCGCTACGAGGAGGGCGATCGTGCCCTGCGGGAGGCCCGGCAGGTGGCGTCGGAGCAGCAGGGCCGACTCAGTGCCATTCAGCAGCAGAGGGACGCCCTGAGGCAGCAGGAGCAGCACCTGCACCAGCAACGAGTGAAGCTGACAGACTCACGCAGGCAGTTGCAGCAGCTGACGCAGGCCCTGCCCCTCGGCGCCACACCCGTCCTGGCAGGTTTCGCGCCCCAGTTCACCAGTACTCAGCTGCTGCCCCCCCTGGAGCTCCCTCACGCCCCCCCTGTGCCCGATACCTCGTCCTCGGAGCTGCAGGCCCGGTTGGCGCTGCTCAGACACACTGCGGAGAAGGACAGGGATTATCTGCAGGACGAGCAGTTCTTCCTGGAGACGCTGAAGAAAGCACCGTACAACATGTTCCACACGGCTTGACCACCCAGGGGTGACGACTGCACACACTCACCAACTCCTTCAAG

Function

GO: NA

KEGG:

id description
K16471 FBF1, ALB; Fas-binding factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54727 lncRNA upstream 616682 29434050 ~ 29446698 (+) True G43895
TU54684 lncRNA upstream 860659 29179098 ~ 29202721 (+) True G43855
TU54679 lncRNA upstream 885114 29177051 ~ 29178266 (+) False G43853
TU54949 lncRNA downstream 14055 30088803 ~ 30090115 (+) False AMCG00013388
TU55048 lncRNA downstream 267721 30342469 ~ 30343923 (+) False AMCG00013399
TU55072 lncRNA downstream 351876 30426624 ~ 30430649 (+) True AMCG00013408
TU55089 lncRNA downstream 380924 30455672 ~ 30457671 (+) True G44182
TU55241 lncRNA downstream 659788 30734536 ~ 30734795 (+) True G44306
AMCG00013377 mRNA upstream 1827 30046238 ~ 30061553 (+) True AMCG00013377
AMCG00013380 mRNA upstream 17880 30033411 ~ 30045500 (+) True AMCG00013380
AMCG00013381 mRNA upstream 39126 30016223 ~ 30024254 (+) True AMCG00013381
AMCG00013378 mRNA upstream 47916 30011468 ~ 30015464 (+) True AMCG00013378
AMCG00013383 mRNA upstream 52686 30003896 ~ 30010694 (+) True AMCG00013383
AMCG00013388 mRNA downstream 8896 30083644 ~ 30090117 (+) True AMCG00013388
AMCG00013387 mRNA downstream 90306 30165054 ~ 30167818 (+) True AMCG00013387
AMCG00013397 mRNA downstream 112092 30186840 ~ 30194163 (+) True AMCG00013397
AMCG00013398 mRNA downstream 133325 30208073 ~ 30217024 (+) True AMCG00013398
AMCG00013396 mRNA downstream 146729 30221477 ~ 30229021 (+) True AMCG00013396
TU54850 other upstream 134683 29921067 ~ 29928697 (+) False AMCG00013375
TU54772 other upstream 404432 29640623 ~ 29658948 (+) False AMCG00013364
TU54615 other upstream 958803 29104289 ~ 29104577 (+) True G43802
TU54454 other upstream 1574597 28484273 ~ 28488783 (+) True G43682
TU54319 other upstream 2127442 27934074 ~ 27935938 (+) False AMCG00013310
TU55045 other downstream 144162 30218910 ~ 30222209 (+) False AMCG00013396
TU55098 other downstream 416079 30490827 ~ 30495656 (+) True AMCG00013416
TU55111 other downstream 488620 30563368 ~ 30568219 (+) True AMCG00013417
TU55261 other downstream 702103 30776851 ~ 30777169 (+) True G44325
TU55551 other downstream 1830220 31904968 ~ 31911801 (+) True AMCG00013468

Expression Profile