RNA id: AMCG00013383


Basic Information

Item Value
RNA id AMCG00013383
length 2422
RNA type mRNA
GC content 0.51
exon number 13
gene id AMCG00013383
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30003896 ~ 30010694 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGAGGGATACCGCCCCCTCGCTCAAGATCTCCTGAGGCTTCATTTCCGGTCCCTATATAAACCGGCTTCGAGCAGCAAGGAACCGGCATTTTCAGCACCGTCACTGCCGCTCCGCTTCTTCCGTCAGTATCGATCCGGATCCGAGACAcgcagcaaaacaaaacagaaacagcaaaaaaaacagTACCCGCTTCGTCTCTTCGCGCACTTTGTTTACATCATGCCTGGATTTTCTGATAGAGATCGTGGTAGAGACCGAGGTTTCGGTGGTGCTCCTCGTTTCGGGGGCAGCCGAGGCGGCGCCCCTCCCGGCAAGAAGTTCGGCAACCCCGGGGAGAGGCTGCGGAAGAAGCACTGGAACCTGGACGAGCTGCCCAAGTTCGAGAAGAACTTCTACCAGGAGCACCCCGACCTTCAGCGCAGACCCGCGCAAGAAGTTGAGCAGTACAGGAGAACCAAGGAAGTCACGGTGAAAGGCAGGGAATGTCCCAACCCTATAATGAAGTTCCACGAAGCCAGCTTCCCATCATACGTTATTGATGTGATCACCAAACAGAACTTCACCGAGCCCACTCCCATCCAAGCACAAGGCTGGCCGGTGGCCCTCAGTGGGAAGGACATGGTTGGCATCGCACAGACTGGATCTGGAAAAACACTCTCGtATTTGTTGCCGGCAATTGTCCACATTAACCACCAGCCATTCCTTGAACATGGAGATGGCCCTATCTGCCTGGTACTGGCCCCAACCAGAGAGCTGGCTCAGCAGGTCCAGCAGGTAGCTGCTGAATACGGACGGGCATCCAGACTGAAGACCACCTGCATCTATGGAGGAGCGCCCAAAGGACCCCAGATCCGTGACCTGGAGAGAGGTGTTGAAATCTGCATTGCCACCCCCGGGAGACTCATAGACTTCCTGGAGGTTGGGAAGACCAATCTGCGCAGGTGCACTTACCTGGTGTTGGATGAGGCAGACAGGATGCTGGACATGGGTTTCGAGCCACAAATCAGGAAGATTGTGGACCAGATCCGGccagacagacagactctgATGTGGAGTGCCACCTGGCCCAAGGAGGTGAGGCAGTTGGCAGAAGACTTCCTGAAGGACTATGTCCAGATCAACGTTGGAGCCCTGCAGCTGAGCGCCAACCACAACATCCTGCAGATTGTGGATGTGTGCAACGACGGAGAGAAGGATGACAAACTCCTGCGTTTACTTGAAGAGATCATGAGTGAGAAGGAAAACAAGACCATTATCTTTGTGGAGACCAAGAGGCGTTGTGATGACCTCACGAGGAGAATGAGACGAGATGGCTGGCCAGCTATGGGTATCCATGGAGACAAAAGTCAACAGGAGCGAGACTGGGTTCTCAATGAATTCAAGTACGGCAAGGCCCCGATCCTCATCGCCACCGACGTCGCCTCCAGAGGTCTAGATGTGGAAGATGTGAAATTTGTCATCAATTATGACTACCCTAACTCCTCCGAAGACTATATCCACCGCATTGGGAGAACTGCCCGCAGTAGCAAAACGGGCACCGCTTACACCTTCTTTACTCCTGGCAACATGAAACAAGCCAACGACCTCATCTCTGTGCTCCGTGAGGCCAATCAGGCCATCAACCCCAAACTCATCCAGATGGTGGAAGACAGAGGAGGTCGTTCCAGAGGTAGAGGTGGCTATAAAGATGACCGTCGGGATAGGTATTCAGGTGGAGGCAGGAGGGATTTCGGTAGTTTTAGGGACAGGGATAATGACAGGGGTTTCGGCAGCGGACCAAAGAAAGTGTTCGGCACAAAGACGCAGAACGGAGGCTATGGGGGAGCCAACTTTGAGAATAGTGGCAATAGCTATGGCAACGGCTATGGCAACAGTGGACAGTCCAGCTATGGCGCTGGTAACCAGCCCGGCACATTCGGGAACCAGAATTTCCAAAACCAGCCGTTTGGAGCGGCCGGTCAGGCCACAGCCCAGAACGGCATGAACCACCAACAGTTTCCATTTAacccacagcagcagcagccacaaCCGCCACCACAGCCCATGGTCAGCTACCCCATGCCCCCCGCATTCCCCCagtaaaacacacacgcacactcgaTCTGTagaagtaatttattttgttttttttttgtctttaagtCCAGAACTCTTTATTCAGACTTGTACTGTTTCTTTTACAACAGGGTTGAAACTTATTTAACATTCGAAGCCTCTTAAATAAACCATAATGGAGCCTGCAGTGCAGCAATAGTGAAGGtgcactttcatttttatttaatttgttacattCCTCCGTAActagttaatttttttttgtactagGAAATGCAAACCTTTTGATTTACACTGTAAATGTTGAAAGTGATATGTTCGAATCTTAACTGAAGGCAGTGCATGgcctttgaataaaaaaaaaa

Function

GO: NA

KEGG:

id description
K12823 DDX5, DBP2; ATP-dependent RNA helicase DDX5/DBP2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54727 lncRNA upstream 557198 29434050 ~ 29446698 (+) True G43895
TU54684 lncRNA upstream 801175 29179098 ~ 29202721 (+) True G43855
TU54679 lncRNA upstream 825630 29177051 ~ 29178266 (+) False G43853
TU54935 lncRNA downstream 52714 30063408 ~ 30065492 (+) False AMCG00013382
TU54949 lncRNA downstream 78109 30088803 ~ 30090115 (+) False AMCG00013388
TU55048 lncRNA downstream 331775 30342469 ~ 30343923 (+) False AMCG00013399
TU55072 lncRNA downstream 415930 30426624 ~ 30430649 (+) True AMCG00013408
TU55089 lncRNA downstream 444978 30455672 ~ 30457671 (+) True G44182
AMCG00013379 mRNA upstream 13608 29968648 ~ 29990288 (+) True AMCG00013379
AMCG00013374 mRNA upstream 59216 29939155 ~ 29944680 (+) True AMCG00013374
AMCG00013375 mRNA upstream 76895 29885762 ~ 29927001 (+) True AMCG00013375
AMCG00013369 mRNA upstream 120774 29876174 ~ 29883122 (+) True AMCG00013369
AMCG00013370 mRNA upstream 134524 29860964 ~ 29869372 (+) True AMCG00013370
AMCG00013378 mRNA downstream 774 30011468 ~ 30015464 (+) True AMCG00013378
AMCG00013381 mRNA downstream 5529 30016223 ~ 30024254 (+) True AMCG00013381
AMCG00013380 mRNA downstream 22717 30033411 ~ 30045500 (+) True AMCG00013380
AMCG00013377 mRNA downstream 35544 30046238 ~ 30061553 (+) True AMCG00013377
AMCG00013382 mRNA downstream 52686 30063380 ~ 30074748 (+) True AMCG00013382
TU54850 other upstream 75199 29921067 ~ 29928697 (+) False AMCG00013375
TU54772 other upstream 344948 29640623 ~ 29658948 (+) False AMCG00013364
TU54615 other upstream 899319 29104289 ~ 29104577 (+) True G43802
TU54454 other upstream 1515113 28484273 ~ 28488783 (+) True G43682
TU54319 other upstream 2067958 27934074 ~ 27935938 (+) False AMCG00013310
TU55045 other downstream 208216 30218910 ~ 30222209 (+) False AMCG00013396
TU55098 other downstream 480133 30490827 ~ 30495656 (+) True AMCG00013416
TU55111 other downstream 552674 30563368 ~ 30568219 (+) True AMCG00013417
TU55261 other downstream 766157 30776851 ~ 30777169 (+) True G44325
TU55551 other downstream 1894274 31904968 ~ 31911801 (+) True AMCG00013468

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051363 False 2513 mRNA 0.46 13 NC_007114.7 25269861 ~ 25275403 (-)
grasscarp (Ctenopharyngodon idella) CI01000034_00520790_00525323.mRNA True 2378 mRNA 0.49 13 CI01000034 520672 ~ 525573 (+)