RNA id: TU54905


Basic Information

Item Value
RNA id TU54905
length 5291
lncRNA type sense_over
GC content 0.48
exon number 3
gene id AMCG00013384
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30040205 ~ 30061634 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGATCAGTCTTGCTTTATTGTTAATCAGTCAGTGGGAAAAGGCAGTACAAGACAGGGACTTGCAATAAAAAGTGCTTCTTCttaacacaatataaaacatgcCCCCAAgaatattttcttgttattaaaagtaattaagatCACATTTGTGAACCACCACAGTGTTTACacatgattgttttaatttatatcacATACTAAGAAAGGctgcaaaaaaacaaggatGTGTGACAGATGATTTGCAGTAAGTTCAtagaagtaaaacaataaaacgtTGTTAATTAAACCTTTTGATACTAACGAACGACTACtggatttcaaaaacaaaatactaattcaagtaatgaattaaaacagtctttcctgGAAAAGAAATGGATTTCAGAATCAATCGATCAGCGTCAACTTGAGATCAGTATCAAAGGTCAGTATCCAGCTGAGTGTTTCCATCATTTTTTACGTGTAAGTTTCAGTCATGTTTAAGGTGACAGGTAAAACGGAGTTACAGAAGAGTCTTCTACACACAAGTCTCCTCGCTGCTTTTGTCCAGGTGGGCTTGCCGTACTCCTTTAGGGACTGCGTTGCTATCTGAGCTCTGACATTGTCATGCAGATGGCTCATTGAACACACTTCCAGCAgggtaattaaaattaaaatattattaccATACCAATACAAAACAAGCAGCACTATAGTCCTGCATACTTACAGAAaaggaaacacatttaaaaaatattattcatttcaCCTTTTTACTGCTTTTGCTGTTCCAGGCATGTCAGACTTGCATGCCTGGGAGCCCGAGTCATACTCTGAGCAGTACGGCAAGCCCAGCTTGGACAGAAAGGGTCAGAACTCGTCTATGcaacactgctgttgtaatcCAGCATTCCCCATATCAATCTGTCCATCTTAAAACACGGCATTTGGCACGACTGAATCTGGCATGAACATGCAGCCACCTTGCTCTCCTCCCTGGCCACACAGGGGCTTACGAGCCAGCCAATTATCTAACTACCATCTTCCCCTCTGAGCTCTGGACTGCCTACTGTTTCACTAATGCCATTCCCTGCATCAAAAACTGTTTAAAGGGGGTCTGACTactacaataaaataaccaaaagaacTACTGCACTACTTTTTCTAAGATTAAAACTAGAGAGCCATACAAAATCGGACAAGATACAGTAATAACCCTCCCAGCGGCTCCTCCAGGCCTAGACAGGCACTGGTCTTGCCTAAAATCTGCGCTAATCTGggcctgtgaaaccagcccataGTGTTTCAAACCAATGTGAAAGAGGAATCACAGCTTTGCACACTTCGAAaacatccccccctccccaaaaatCGTTTTACTCCATGTCTCTCTTTCGCCTCCCTGTCTATGTTGTTCTTCAGGTCAAGCATACTCTTGGAATGAAGGGatcaggaagaaaaacaaaatgtagatgactgaatgaaaacaacacaaagaaggaCAAGTAGGTCTTAGGAAATGTAGGCAGTGTGCAGCGGGTCAAATACAGAAggaagaattttttttttttgtcacagcATTTGTACCTTGGTGTAGAGGTCTTCACAGGTCCAAAAATATGTGCCCGAACTCGAAGAGACCCGGAAATGTGCTATTCGGAACTGACCCGGACCCGTCtgttatttgaaatttgaaatctggacccggacccagccgggacacacagacctgatTGAACCTGATCGGCACAGACCCCACAGCTAATcgctattaacaagttaatttacaagctgtgaaaataaaactttgtgtcttacctaatgtaacgttagtagcttctctcctgtacctgacCGTGACGCATATAGTCCGTCCTCCTTGCCAGGAaagttggtaaaataacatccatgaagctcctcttgctgattgaaagcgcctgtataatccactcattatttcagttcaaaagTCCACTCGCTGTCACGGTGGCAGAGGACGAACAcgactttgcagctttgcagttttttgtatctcgcataatatgataacttccactgtttgcccttttgaactataataatgATTGCTCATTCAGTGCCAGGCCGCTGACATTAGCATTACTAATCTGCTGTCATTGTGCTCTGAGACGCGTCTGCCATAGATTTAGATACAAAGCGAACAAACTCCAACCACGATATCTCAAAAATCGCGCCGACGCCCATAATGCACTTCGGTTTACatcatctgtcaaacaccgatatggcggaataagtcccgccttataaataaaagagccaatcgtcaattggtaaagtcaCTGCATCACTCGGGTATTatacacaatgttaaacagacccgggacccgaagtacaagaatgggacccgacccggacccggctgaccgtttaaaatatggacccgAACCCGTACgggtggacccgtgaagacctctacctTGGTGCCATTTGTAGCACACAGCAGCAGGGGGCTTCTGGGACCTGCAGGTCCACCATGACCAGGCTGATCTCCTTCTCCAGGCCTGCACGGAGCTTGCTGGAGTCCTGCAGCTCTCTCCGCAGGCGCACCAGCTCCGTCTCCGTTTGTGGGTCCACCCTGAAGATCTCGTTGACGATCTCCTTGATCTCCACCCTGGGTTTAATCTGCTCCACCTGACTGAAGCGCAGCTGCATGTTGCTGATCTCTCGCAGAAAGCTGGAGTTGCggtttctctcctcctccagcatGGAGCGCAGCTTCTGGGCCTCATTAATGAGCTCGGGGTCCTGCTCCACTCGCTTCACCTCCTTCGTGATGACCTTGGGCTGCACGGTGGGGATAATCCTCTCCAGGGTGTTGATCTGACTCCGGGTTTGAAAGATCTGGTCGTTCAGAGACTTGCACTTCTGGCCCTCCTCGGAAATCTCGTTCTCGAAGGTCCTGACCGCCCTCAGCATCTCGGGGTCCTTCTCCACCTTCAACACCTCCTTCTTCACCACCCTCTCCTTGATGATGGGCTGCTTCTTCTCCAGGATGGAGATCTCCGTCCTGATGTGCACAGTCTCGTTCTCCCGGGAGCGTACATTGTCCTTCGCCCGGCGGATCTCATCTCTCAGCCGGTTGGCCTCAACATCCAGCTGGGGGTCCCTCTCGATTTCAGTCACCTCCTTGGTCAGCAGCTTTGGCTTGATGCTCACCATCTCCTGGTCCAGACTAACAATCTTCTTGTTGATCACCTCGATCTCAGTCTGGGTGGCGGAGCGGCGCATGTTCTCATCCTGGATCCTGTTCTTCAGAGAGAACAGTTCACTTTCCAGCTTGGGGTCCCGGTAGTACTGCaccacctccctctcctccacaCGCTCCACCCCTCTCCTGCTCTTCAGGGACATCATCCTCTTGCGGTAGGTCTCCAGGTCCTTCTTCAGGTTGTCTGTCTCAGCCAGGTTCCTCTGCTGGCTCTCCATCTGCAGCTGCTGTTTCACCACCACCTGGTTGACCTTGTCCTCGTTCTGTTGACAGGAAACAACAGTTAGATCCCCACGGCAATGGTTGTGATGGTGCCCCTCTGGAACAATGGTCAGTGCAGGGGCAGCTCATGATTACATTCCACTGTTTATCCCATTTCCAGTCTAATTTTGGTTAAgaagtgtacatatatatagtatatagtacaTCTATACATATGACCAGGTTACTAATCTGCCGTTTCATTGCTCATTCTAGGCTCATTGTAAGATACTGAAttctatgtaaatatataagTTGGTATATACAGATCTGGTATAAATTAAGAGAcaactccaagttcagaaatcaatgttaagtggtctcttaattttttccagagctgtatatatttttaacaggcTCGTAGGACCGGTCTGGATTTGCGCACCTGAGCGACGATGTTTTTGGCGAAGCTCATCTGGTTGAGCAGCTGGTTGTTCTCCGCAGACACCTCGGCGTATCGGTTCACCAGCCCTTTCTCCTGCAACACAGCGCCGCCAGCCTCCGTCACAATCcaagtgtgattgtgtgtgtgagtgtgttattgtgtgtgtgactgtctgtcattgagtgagtgtgggtgtggttgagtgagtgtgagagtgagtgagattGAGTGTGTGATTATGTGATTGTGTGATTGATTGAGTGTGTTATTATGTGATTGTGCCACTCTACCTGTTTCTGCACACTATCGGCCAAGGAGGAGCTGTGCAGCCTCTTGGCTGCGGTGGCCCCCAGCGAGGGGTCCAGCGTGCTGCAGTACTTACTGGAGTTCGTCTCATACTCCTGTTGGGGGAGAAAGCAGGCATCAGACGGAGAACGGCCAACAGCGCTGCTTAGCACTGCGATTTCATAATTGCTTTTAtagaaggaagagagagaaggagggaggtaGAGGGGAGAAAGGGGGAGAGCAGAGGCTCAAAATGAAGACATGGTcagaggggaaagagagagagacaaccaGAGACGGAaacaggtagagagagagagagacagggactgCTGTGATCCAGTCCTGCCTGGCCTTACGCTGAGCACAGACTGCAGGTCGTTGGACAGGTCCACCACGCGGTCCAGGTCATCGCCTTTCCTCTTGATGTCCTCTACCACCCTCTGcagaacagacagacacattgcGCTCAGTCAAGGTGGATAAAGGCATCAGCCACATAAAactcataatcataatcataataataacaaagtgGCTACTGGTAGATCCTAGTTTGGGAGCTATTTTGAATTCACAGCCATTTTATGTACTGATCCCGGTCCACCAGTGCCTCCCCGACACACTCACCTTCTGGGAGCTCTGCTTGGCGTTGATCTGGGACAGGTTGTCCATAGGGCTGATCTTGTTGTCGGGCAAGTTGCTCAGGAAGGAGTTCAGCGATTGGGTGTTGCTCTGGAACGCCTGGTGCTTATTGGCTGCCTCCTGGGCAAGGTTCTCCCTGGAGGAAGGATGCCGTATCATGGGCAAAACATCAGACGCACTGCGCACAGTCCACCCAAACCCCGGGTTCAGTTTTATGCAATCCAGCCCAATCCAGCCCATTACTTTTCTCAACTCAGCCCACCCTGCTTCCCAGTCCAGCCCACCCACCTCTGCAGCAGCTGGTTGTTGACGGTGGCGTAGCGGTTCTTCAGCCGCTGCACCTCAGTCTCCTGGCGGCGGATGTCGGGGCAGAACTCCTGGTAGCCCTTCTGCAGGGAGCTGCACAGCTGCTCTGTGGTCTCCAGGTCACGGCTCAGCTTCTGCATGTCGTCCTGCTTACTAGCCAGATCCTTCCTCAtgcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54896 lncRNA downstream 11975 29926383 ~ 30028230 (-) True G44034
TU54897 lncRNA downstream 29505 29950840 ~ 30010700 (-) False G44034
TU54893 lncRNA downstream 95618 29939148 ~ 29944587 (-) False G44034
TU54758 lncRNA downstream 540632 29497710 ~ 29499573 (-) True G43919
TU54650 lncRNA downstream 918886 29119373 ~ 29121319 (-) True G43831
TU54958 lncRNA upstream 27169 30088803 ~ 30090147 (-) True G44086
TU55012 lncRNA upstream 111858 30173492 ~ 30175306 (-) False AMCG00013390
TU55141 lncRNA upstream 245392 30307026 ~ 30310766 (-) True G44230
TU55124 lncRNA upstream 323052 30384686 ~ 30455606 (-) True G44213
TU55187 lncRNA upstream 472337 30533971 ~ 30539317 (-) True G44261
AMCG00013385 mRNA downstream 37323 29991300 ~ 30002882 (-) True AMCG00013385
AMCG00013376 mRNA downstream 105035 29931650 ~ 29935170 (-) True AMCG00013376
AMCG00013372 mRNA downstream 236962 29796583 ~ 29803243 (-) True AMCG00013372
AMCG00013373 mRNA downstream 246079 29746227 ~ 29794126 (-) True AMCG00013373
AMCG00013361 mRNA downstream 590724 29445941 ~ 29449481 (-) True AMCG00013361
AMCG00013386 mRNA upstream 18980 30080614 ~ 30083441 (-) False AMCG00013386
AMCG00013389 mRNA upstream 30228 30091862 ~ 30100704 (-) True AMCG00013389
AMCG00013391 mRNA upstream 56166 30117800 ~ 30126501 (-) True AMCG00013391
AMCG00013393 mRNA upstream 65063 30126697 ~ 30153358 (-) True AMCG00013393
AMCG00013392 mRNA upstream 93628 30155262 ~ 30164478 (-) True AMCG00013392
TU54894 other downstream 29505 30006764 ~ 30010700 (-) False G44034
TU54700 other downstream 785889 29253396 ~ 29254316 (-) True G43869
TU54456 other downstream 1572299 28467312 ~ 28467906 (-) True G43684
TU54344 other downstream 1967418 28068213 ~ 28072787 (-) True G43594
TU54196 other downstream 2471054 27568764 ~ 27569151 (-) True G43473
TU54953 other upstream 19402 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other upstream 19402 30081036 ~ 30083345 (-) True AMCG00013386
TU55007 other upstream 104183 30165817 ~ 30169136 (-) False AMCG00013390
TU55119 other upstream 226658 30288292 ~ 30290867 (-) False AMCG00013405
TU55155 other upstream 338253 30399887 ~ 30423025 (-) True G44243

Expression Profile