RNA id: AMCG00013385


Basic Information

Item Value
RNA id AMCG00013385
length 3606
RNA type mRNA
GC content 0.61
exon number 22
gene id AMCG00013385
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 29991300 ~ 30002882 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGTTGACCCTACGTCATATCCGGAAACAAAATGCTGGGCCCGACAGCCAATCGGGATATTTGGCTGTTTTAAATGTCCGAGAGCCGGAGCCGCTGAAGACGCGTCTGATGGGAGAGCAGATCTTCGCGATCTGTCCGCGCTTTTAAACACGTCAACTCCCCCGTTTTCGCAGCGCAACACCCGCTTTGGGAATAAACTATTCATGGGAACCCAGGAGGAGAGAGACTGGGTGGATGCTGCCAATGATCTGCTCAGCAAGTGTCACATTAACCTGCGGCTAAAGAAACTGACCGACTGCGACGCCGGAGTTTTCGTTGCTTTGTACGAAGCGATCTTGGGTGATAAAGTCCCAGATTACATCGCCGCTCCCCGCAGCCAGGAGGACGACGCCCACAATGTGCAATCTGTGATCGACTCGCTGGCTCTGGATTACCTGCAGATCAGCTTGTCTCACATCACAGgagaaaatgtgGTCCGAGGGGACAAGGAGTCGGTCAGGAACCTGCTGGAGATCTTCGACGGGCTGCTGGAGTATCTGACGGAGCAGACGAGTGAGGAGGACTCCCAGACCAGCGATGAGCCAGACTGTGTCTCGGACGAAGCGCCCTCACCGGCCCAGGAGCCGCCACTGGAGCGGCTGGCGGACGAGAGGGAGGCCCTGTCTGAGTTCCGGCCTCCGTCCTCCAGAGGGTCCACCGCGCAGTCCTCCCAGTACTCCGGGCCGCTCTGGGACATGGAGGGGTCCGAGTCCACGGCGGAGCTGATCAGACTCGGGGACTCTGCGCGCACCTTCACGGCCAAAAGCCAGGCTGGGAGGAACGGCAGCCCCCCCTGCACAGAGCCGCCCAATGGGATCCACCGGACTGGCAATTCCTGCACCGGGACAGGGGCATCGCACCATAGAGACCAcgCGGTGGAGCCCGTCTCTCTGCCGGCGGCGCCTGTCTCTCTGTACGTCCCGCACGGCCCTGCCACGCAGCTCAGAGAGCCCCTGCGCCCCGCCACACTGCTGCAGCCCCCCTACCAGCCGGCGCAGCCCCCCACAGAGGGACTCGCGGACGTGCTGATGGACAGATCGCTTCCCGCCAGCGCCTCTGGACAGCGGGGGGAGGAGGTCCCTGTGCCGAGAACGGGCAGCCCGTCCCCCAGGCAGCTGTCTGACACCCCCGCCCTCAATGGCCTGCGCTCCCCCTGCCACTCTCCAGTGGAGAGCGAGAAGTCAGAATCCAGCAGCTCCACGTCAGCCAGTCGGAAAAAGAAAACGTCCACGAGCACCGAGCTGGAGCTGCCCGAGTCCGGCGCCACGGGCAGCAAGAGGGTGGCCTTCCGCACGCAGCCCGACATCCGGCTCCTCACCCTGCAGAGCGAGCAGGAAGGGCTGGCAGACTGGGGCTccggggaggaggaggaggaagaagaggaggcaGGCTCCGGGCAGCAGGGTCGAGCCAGGCAGCAGAACCTCCGAGGGCCCGGGGACCAGACGAGCCTCAGCGAGGGCAAACTGAGCGGCGCCAGCCCGGGGGAGGAGCCGCTGTCCTGGCGCCGGCTGAAGAACCGACAGAAGgagcaggagctgcaggagatGTCGGACAAGCTGTCCCGCCGTCTGGAGGAGCTCCACGTGATGCTCCAGCAGGCCCTGGGGGAGGGTGCCGAGACGAGCGAGACCAGGGAAGAGGACAAGCTGTCTCACCACAGTGACAGCTTCATGGAGTGTCGCCGGACCAAAAGACAGACGGGCCCGCCGCATCCCGCCAAGCCCCCGCGCACGCGCTCGCTGTCGCCATCGCCCCCCCCGGCGCGGCGCCACCTGCAGGTGCAGTTCGAGGAGCCGCTGACCCGAGACGCGCAGGGCCGCCACCTGGCCAGAGTGCGGCGCCACACCCGGGCCGAGCTGGACTCCTGCAGGCGGAAGGGACAGGTCGTGGGCAGAGCGTACCAGGAGGAGCTGCGCCAGTACGAGGACAGAGAGCGCATCCACATCGCCAAAGAGACGGCCAAGGCTATGGAGACGGAGAAGGAGTATAAAGAGGCCCTGCAGAAGGACACCCCCTCCACCCAGAAACCGTCCCGCATCTACTCCTCCAAGagcgccccccccacccctcgaGCGGGCCCCCACACCCCCTCCAGAGGACGCGTGCACCCCCGGAAACCCACCCCCATGCGGATCCGGGACAACGACCTGCTGCCCCAGCTGCTGGAGGACCTCCCCGGGCTGCAGCTGTCCCCCCACACGCTCAACAGGATGTGGAAGCAGCAGCTGCGGCAGGTGGGCAATGTGGCGCCGCCCCTCAGCGGCCGCGGCCGGAAACAGCTGGACAGCCAGgTGGAGGAGGCACAGAGGAAACATGACCTGCTGGTGGAGATCATCCGCAAAGAACAGGAGCACAACCAGCGACTGAGGGAGTTTCAGGATCGCATCCGTCTGCAGAAGTCTGCGCAGACGCGGCTCAGGGACCAGAGGCAACAAGTGGCTCGAGCCCGAAAATACTACACTGAACACCACGTGCAGCTGAGAGCGCGACGCATGAGAGCACGGACACGAgaggagaggATGGTGAGGCAGCTGTTCGAGGAGGGGCTGGAGCTGCAGAAACAGCGGCTGCTGGAGATCCGGGCCGACGCCAAGGAGCAGCGCCAAGAGCACCGACGCCGCCACCGGGACGAGCTGCAGGCCATGGAGAACTACTACAAGGACCAGTTCTCCCTGCTGGCTGAGACTCTCGCTCAGGAGCGCCAGGAGATCCAAGTCCGCAAGAAAGCGCAGGAGAAGGCTCTGCAGAAGATGAAGAAGGAGCTGCGCAGTAAGATGCAGCGGGAGATCGGGGAGCTGCAGCAGATCATCCTGCAGAACGATCGGGACGACTTCTCCTGCGAGCGCGAGGTGGAGAGACTGCAGCAGCGCATCCACACAGCCTCCTTCCAGTACAGCGCCGGGCACCTGCTGTAGGACAGGACCTTCTGCGGAACCTCAGGGCCGGACACCTGCTGTAGGAGCCCCCCGCGGACCCCGACGCCCGGCCTCCCACCCTCGTCACTTTCATTgtcgctgctgctgctcacaagactaaaggatttatttttttgtcagttttaaactaaattatttgaGCGTTAACACCTGAATATATAACTCCTCCTCTGCTCTGCGCTccagtctgtgtgtttgataACGAGGTTAACGAGATAACCAGCATCTCCTTCCggacactaataataataataatgaaggccaactttttttttttttaactccctaagtgaattatttttatttcctgtttgtttgagTACTTGCTGGATGCGTCTCTCTCCCTTAACACCGTCTTAACACTGTAAAATGATTGTACAGACCggcttttaaattatttattaaaatcgGACTacttttggttttagttttagtctcTGTTGTGGTTTCACACAGTGTCGCTAGAGGGGGCTGTGGGACTGACATTAGTAAAGTGGTCAATGCTGGAGGACGTCCAGTAGGGGGCGGCGCAGAGATCACAGGCTGCCTCTCTGGGCCAGCCACTCAGAGTCGATGTCCAGCTGGACCCggggctggagagagagggcacTGAAGATGGACGGA

Function

GO: NA

KEGG:

id description
K16544 CEP95; centrosomal protein CEP95

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54893 lncRNA downstream 46713 29939148 ~ 29944587 (-) False G44034
TU54758 lncRNA downstream 491727 29497710 ~ 29499573 (-) True G43919
TU54650 lncRNA downstream 869981 29119373 ~ 29121319 (-) True G43831
TU54654 lncRNA downstream 873339 29115222 ~ 29117961 (-) True G43834
TU54656 lncRNA downstream 873339 29115222 ~ 29117961 (-) False G43834
TU54905 lncRNA upstream 37323 30040205 ~ 30061634 (-) True AMCG00013384
TU54958 lncRNA upstream 85921 30088803 ~ 30090147 (-) True G44086
TU55012 lncRNA upstream 170610 30173492 ~ 30175306 (-) False AMCG00013390
TU55141 lncRNA upstream 304144 30307026 ~ 30310766 (-) True G44230
TU55124 lncRNA upstream 381804 30384686 ~ 30455606 (-) True G44213
AMCG00013376 mRNA downstream 56130 29931650 ~ 29935170 (-) True AMCG00013376
AMCG00013372 mRNA downstream 188057 29796583 ~ 29803243 (-) True AMCG00013372
AMCG00013373 mRNA downstream 197174 29746227 ~ 29794126 (-) True AMCG00013373
AMCG00013361 mRNA downstream 541819 29445941 ~ 29449481 (-) True AMCG00013361
AMCG00013362 mRNA downstream 545428 29444447 ~ 29445872 (-) True AMCG00013362
AMCG00013384 mRNA upstream 39708 30042590 ~ 30047619 (-) False AMCG00013384
AMCG00013386 mRNA upstream 77732 30080614 ~ 30083441 (-) False AMCG00013386
AMCG00013389 mRNA upstream 88980 30091862 ~ 30100704 (-) True AMCG00013389
AMCG00013391 mRNA upstream 114918 30117800 ~ 30126501 (-) True AMCG00013391
AMCG00013393 mRNA upstream 123815 30126697 ~ 30153358 (-) True AMCG00013393
TU54700 other downstream 736984 29253396 ~ 29254316 (-) True G43869
TU54456 other downstream 1523394 28467312 ~ 28467906 (-) True G43684
TU54344 other downstream 1918513 28068213 ~ 28072787 (-) True G43594
TU54196 other downstream 2422149 27568764 ~ 27569151 (-) True G43473
TU54172 other downstream 2698227 27273229 ~ 27293073 (-) True AMCG00013295
TU54894 other upstream 3882 30006764 ~ 30010700 (-) False G44034
TU54953 other upstream 78154 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other upstream 78154 30081036 ~ 30083345 (-) True AMCG00013386
TU55007 other upstream 162935 30165817 ~ 30169136 (-) False AMCG00013390
TU55119 other upstream 285410 30288292 ~ 30290867 (-) False AMCG00013405

Expression Profile