RNA id: TU54954


Basic Information

Item Value
RNA id TU54954
length 1622
RNA type TUCP
GC content 0.48
exon number 3
gene id AMCG00013386
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30080614 ~ 30083441 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCATTCTGCAGGCGGACGCGGAGGAGATGGGTGTGTGTTGGAAATGGGCGCCGGGACGCGTGTCCTTGTTAAACCCGAATGGGGTTATACTGCACCAACACGCCTCGGTCTAAATACAGACTTGTGATGTAGCTGAGCCGTGGAAAGGCATGGCCCGTGGCGGGAGGCCATTTTGCACACCCTCCCGACGACGCAATCCTCGCACAATGGTAATGTTCCTTTAACCAGCATGAACGATTTCTGTTATCTAACGATCCGAGCCGATGATGATCTAAAGTTATCCCTGTCTGAACTCAGTGGTGAGGATACCGTTTCCCTCTGAAGGCTCCAGTGCAGTCATGGTGGTGTGCATGAGAGTAGTAGCTCCCGGCCAATAAGACTGGAGTGAAGGATGGAAACCCATCTATAGCCTAACGCCAATAGCAGTGCATGTCCCCTGTGTGACTTGTGTATTAATCGACCCTGTCTGCAGTTTGAGTGCTTTTAGCAATtctatatataatgtatcttTTGGGTAAATAAGTCTGAGTGCCAACTGACCTGACTTCACTATTCTTGTTTGCAGGGCTGAGACGTGGTCTGTCATCATGTGACTGAAGGATGGGGGTTTCAGGGTCAGCCTGGAGAAGCATGGGTGGCAGGCTGGTGGCTGGTGCTTGGGGCTGGTCCTTCACTCGCGGAGGTGCAGAGCAGGTATGTGGGACCTGTGGTGGTTCGGTTTATGCTTAAAAGCGAAAAGGTGGAAAGCTCTGACCCCTTGAGTGTGGCAGTGCCTGTTGTTAGCCTGTGATGATTCAAGTTATCCCTGTCTGAACATTGCTGTGGACTCTTGGTAATCTGAGGCCTGATGGATCCCATGGTCATGGAATTTGAAATTGCATTTTCCAGGCATGGATTTATatttccaaaaaaatatatatatatattcatagttTTGTGTGCAGTGAATTCAGTAATCCCCTTCCCAGCCTGCAATGAGCTGTTTCATAGATGAGCTTCCCTAGGAGAAAGGCAGTGTTTGAGGTTCTGCTGAGTGGATTAATCCAATATGCGTTGATCCTACGAACAGAAACAATCCCACATTCAAACCCATCATCCTGTCATCCAGCCAAATTCCTGCTAATACTGAACTAAATGtgcagtttcatgcatttaaattagaaaaagcacatcTCATAATAAGTGCACTTTGTGAGAGATCCAGAGCAGTGCCTCCCTCACATGAATCTCAGAATTTGGGGAAACGTCTTTCTTTGGAcaggattaaaataatatgatgcTGCTGAGCTGTGGCTCCATGTCTTGCTGTACGTCTCTGTCCTCTCCGGTGCCATTCTGCTCTGAACTCCCTTTTCTTTCCTCCCCTTTCCCAGGCATCAGACAGGCGAGGCGGCCACAGGCAGATCAAGAACCTGAGGAATGTGGTGAAGGACAGTCCGGTGGGGCGACACCGCAGTACCTTCATGGAGCTGCAGCAATTCATGGCCCCTTTACACTCGCACTGCGGGGTGATGACAGGGTGGTACAGACCAAAGGGACTGCCATGTGGCAGagttttgtattctgtttctcCCACTTTGGTTCAATGCTTTCATGTCATGcctgagaaatacattttgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54905 lncRNA downstream 19402 30040205 ~ 30061634 (-) True AMCG00013384
TU54896 lncRNA downstream 52806 29926383 ~ 30028230 (-) True G44034
TU54897 lncRNA downstream 70336 29950840 ~ 30010700 (-) False G44034
TU54893 lncRNA downstream 136449 29939148 ~ 29944587 (-) False G44034
TU54758 lncRNA downstream 581463 29497710 ~ 29499573 (-) True G43919
TU54958 lncRNA upstream 5458 30088803 ~ 30090147 (-) True G44086
TU55012 lncRNA upstream 90147 30173492 ~ 30175306 (-) False AMCG00013390
TU55141 lncRNA upstream 223681 30307026 ~ 30310766 (-) True G44230
TU55124 lncRNA upstream 301341 30384686 ~ 30455606 (-) True G44213
TU55187 lncRNA upstream 450626 30533971 ~ 30539317 (-) True G44261
AMCG00013384 mRNA downstream 33417 30042590 ~ 30047619 (-) False AMCG00013384
AMCG00013385 mRNA downstream 78154 29991300 ~ 30002882 (-) True AMCG00013385
AMCG00013376 mRNA downstream 145866 29931650 ~ 29935170 (-) True AMCG00013376
AMCG00013372 mRNA downstream 277793 29796583 ~ 29803243 (-) True AMCG00013372
AMCG00013373 mRNA downstream 286910 29746227 ~ 29794126 (-) True AMCG00013373
AMCG00013389 mRNA upstream 8517 30091862 ~ 30100704 (-) True AMCG00013389
AMCG00013391 mRNA upstream 34455 30117800 ~ 30126501 (-) True AMCG00013391
AMCG00013393 mRNA upstream 43352 30126697 ~ 30153358 (-) True AMCG00013393
AMCG00013392 mRNA upstream 71917 30155262 ~ 30164478 (-) True AMCG00013392
AMCG00013390 mRNA upstream 84636 30167981 ~ 30184424 (-) True AMCG00013390
TU54894 other downstream 70336 30006764 ~ 30010700 (-) False G44034
TU54700 other downstream 826720 29253396 ~ 29254316 (-) True G43869
TU54456 other downstream 1613130 28467312 ~ 28467906 (-) True G43684
TU54344 other downstream 2008249 28068213 ~ 28072787 (-) True G43594
TU54196 other downstream 2511885 27568764 ~ 27569151 (-) True G43473
TU55007 other upstream 82472 30165817 ~ 30169136 (-) False AMCG00013390
TU55119 other upstream 204947 30288292 ~ 30290867 (-) False AMCG00013405
TU55155 other upstream 316542 30399887 ~ 30423025 (-) True G44243
TU55165 other upstream 372382 30455727 ~ 30459331 (-) True AMCG00013409
TU55166 other upstream 393793 30477138 ~ 30478194 (-) False AMCG00013412

Expression Profile