RNA id: AMCG00013388


Basic Information

Item Value
RNA id AMCG00013388
length 2653
RNA type mRNA
GC content 0.52
exon number 9
gene id AMCG00013388
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30083644 ~ 30090117 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCCAAGTCTCGGAAACACACGAAAGCTTCCGACGAACGCCGAAACGAGGAAGCCATATTGCCATACAGTGGTGGTGCGAAATGCCGTTCGTCTCCTGAAGCCGGACGCTCACGTCACTGTTTATCCTGCCCAGACAGCCATCCGTCAGCTGTGAAAGTCGTGCAGAGTTAAAGCATCTATAAAACGACCATGTTCACGTCGCAGACCTCGTTTCAGGACTCCATAGACGGCGATGACAAGGACGCGGAGCTGGACAGCGAGGAGATCCTGGGATCCGGGCAGAAGTCGGCGCAGAGTCTGACCTGCTACTATGCGCTGTATTTCTACCAGAGCACCAGAGCCAGAAGACAGTCAGGCTAGGAGCCACAGACGAACAGACTCCGCAAGTCATGACGACTTTAGCCTCTCCCTGGTGGACAGCAGCCTGCCCCCGGAGGCCGAGCCTGAGCTGCGCGGCTACATCTCACGGCGCCTCAGCAAGGGGGCGCTGCTGGGGGGCATGGGCAACATCGCCACCGTGGAGCTGAGTGTCCACGAGCCAGCGCTGGGCTGCTATTGCTGCCTGCTGGAGACGGACAGACAGGGGGACCGacaggcggaggaggaggagggaggcaaTGCGAACTACGTTAGACCCACATTCAGACTGGAGCTGGACAAGTATGTTCAGGGCCTGCAGAGCTGGCTGTGCCCAGAGGTGTCAGGGCTGGAGGGCGCAGTGGGGCCGTACCTCAGTGGCTGGTACGAGGACTCGGTCATGCACATCCAGAGAGTGGTGCAGCTGGTCCAGGACAACGTCTGCTTCCTGCTGCACGCGGCGGCCAGTCTGCAGGGTCTGGTGCAGGAGGAGTCCACCGCCGCCTCGCTGTGCACTGCACTCTCCGAGGATGGCGCCCGTTACCTGCTGATCGACTGCTCCGAGCCCAGCCCCCGCTTCACCAACGCAGTCAGTAACCGCTTCTGCGACGGCTGGGTCCCAGCCTTCCTCAACGCGGCCGAGGGGGGCAACCCCTTCCTGCTCCGGCAGATACTGGAGAACTTCAAACTGAAGGCCATACAGGACATGAACAATCTGAAGCGTTTCATCGGCCAGGCGGAGATGAGCCACTATGCCCTGTTCCGCTGCGCCGTGTTCCTGCGCAGCTGCGGCAACGGAGACGTGCTCCTGCAGAATGCCCGGGCGGAGCACAGCGGCCAGCCCCAGGGGGCCAGCATCGTCCGCGTGCTGGAGGAGTTCCTGAGCGAGCCGGGCGactgagggggagggagcagggtgggggaggggagagagagtgggatgAAGGGGAGACAGtaaaggagagggagggagagggggaggaaggagaCGATTCATCCGAGTCCACACTGAGAAACTTTATCGTATCGCAAACACTACTGTAATGTGCGTTACCTCTAATGCAACAAAGCTACAGAAAGCAGCCGCTGATGTGGATTATTTGTTGGCGTTGTCGCAGGCAGTGTTCAGTAGCTAACCCAGCGCACCGTGCGTTAAGGGTGGCCTGTCACACCTTTACACCCCTCGCCCTGGACTGAGCTGTTTATCTAGCCTGGCTAATCGGGCCACTTAGtttacagagaaaaagaaaatctgtttggTAAAATATATGGATGAGGCATTTACTAACTTAATCTCTTCCTGAAGCattgtgggggtgtgtgtgggtgtgtgtaggcgtgtgtgggtgtgagcACATGCTTCTCCAGTTGGACTGACCATTATCCATGATCAGACtctattaacattttaagaaaCTTGGCCCTAAGCTGAGCgtagtgctgtgttgtgtagcaAATATCTACAGTACTCCTGAGTTGTAACACTAAGTTATTGAGTTGTCGTCACTGGGTTATAGAAAGCTCCCCAGACAAGCCCTTCGCACCCCGATACGCGTCTCTGTCGGCTGCTGCCTTCCTCTGCACAATAATAAGCTGTTGTCTTCACCAACGAAAGGGTGTCTTAATAAGCTCATCTTGAAAGACATAAATGAAGCGACCTGAGACCAGcttttttttgcaaattatgCTAAACAAGAGGAAGTGGAGAGTCCAGAGCAGGAGATGGAGGTgaagaatttgtattttgttatttaatactaaaaaagtttaatttgtgaCCTGACTCAGGGTGGTGCAAAAGTCCAGCCCTGTAGAAACTctaataagaaataatatattttgttaacaCTAGATTGTGTGGCccaatttaatatgaaatagatattcaattgaTAATCAATTAGCATTccactaattaattaaacttcagTAGAATGTGCTGACCAACCAACTGTATAGAGTTCTCTGACTGCATTGGGTTTTCAGCCTGTGTGTCTATAACTGACGATGTCGGcttgttatttattgatgtcACATATTCCACAAACTACGTGTTGTCGCACCACACAATGATACAATGAGAACTAATTTTCtcataatttaatgtttacgGCATTTCTCATCTGCTGATGTGATGtttatgtgcttttatttttaatggaaatgtcaccatgttttggaaaatacaaattgtcCGTAAATGAGGCTTTTGCTGGGAGCGGATGTTTCGAGATGCGCACAAGTATCGAGTCTTGGATCACGTACAATAATAAAGGTCTTGATTCGTGCCTCAGA

Function

GO:

id name namespace
GO:0031290 retinal ganglion cell axon guidance biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54935 lncRNA upstream 18152 30063408 ~ 30065492 (+) False AMCG00013382
TU54727 lncRNA upstream 636946 29434050 ~ 29446698 (+) True G43895
TU54684 lncRNA upstream 880923 29179098 ~ 29202721 (+) True G43855
TU54679 lncRNA upstream 905378 29177051 ~ 29178266 (+) False G43853
TU55048 lncRNA downstream 252352 30342469 ~ 30343923 (+) False AMCG00013399
TU55072 lncRNA downstream 336507 30426624 ~ 30430649 (+) True AMCG00013408
TU55089 lncRNA downstream 365555 30455672 ~ 30457671 (+) True G44182
TU55241 lncRNA downstream 644419 30734536 ~ 30734795 (+) True G44306
TU55242 lncRNA downstream 646692 30736809 ~ 30737487 (+) True G44307
AMCG00013382 mRNA upstream 8896 30063380 ~ 30074748 (+) True AMCG00013382
AMCG00013377 mRNA upstream 22091 30046238 ~ 30061553 (+) True AMCG00013377
AMCG00013380 mRNA upstream 38144 30033411 ~ 30045500 (+) True AMCG00013380
AMCG00013381 mRNA upstream 59390 30016223 ~ 30024254 (+) True AMCG00013381
AMCG00013378 mRNA upstream 68180 30011468 ~ 30015464 (+) True AMCG00013378
AMCG00013387 mRNA downstream 74937 30165054 ~ 30167818 (+) True AMCG00013387
AMCG00013397 mRNA downstream 96723 30186840 ~ 30194163 (+) True AMCG00013397
AMCG00013398 mRNA downstream 117956 30208073 ~ 30217024 (+) True AMCG00013398
AMCG00013396 mRNA downstream 131360 30221477 ~ 30229021 (+) True AMCG00013396
AMCG00013394 mRNA downstream 166166 30256283 ~ 30263941 (+) True AMCG00013394
TU54850 other upstream 154947 29921067 ~ 29928697 (+) False AMCG00013375
TU54772 other upstream 424696 29640623 ~ 29658948 (+) False AMCG00013364
TU54615 other upstream 979067 29104289 ~ 29104577 (+) True G43802
TU54454 other upstream 1594861 28484273 ~ 28488783 (+) True G43682
TU54319 other upstream 2147706 27934074 ~ 27935938 (+) False AMCG00013310
TU55045 other downstream 128793 30218910 ~ 30222209 (+) False AMCG00013396
TU55098 other downstream 400710 30490827 ~ 30495656 (+) True AMCG00013416
TU55111 other downstream 473251 30563368 ~ 30568219 (+) True AMCG00013417
TU55261 other downstream 686734 30776851 ~ 30777169 (+) True G44325
TU55551 other downstream 1814851 31904968 ~ 31911801 (+) True AMCG00013468

Expression Profile