RNA id: TU54949


Basic Information

Item Value
RNA id TU54949
length 1313
lncRNA type sense_over
GC content 0.41
exon number 1
gene id AMCG00013388
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30083644 ~ 30090117 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggaaggagaCGATTCATCCGAGTCCACACTGAGAAACTTTATCGTATCGCAAACACTACTGTAATGTGCGTTACCTCTAATGCAACAAAGCTACAGAAAGCAGCCGCTGATGTGGATTATTTGTTGGCGTTGTCGCAGGCAGTGTTCAGTAGCTAACCCAGCGCACCGTGCGTTAAGGGTGGCCTGTCACACCTTTACACCCCTCGCCCTGGACTGAGCTGTTTATCTAGCCTGGCTAATCGGGCCACTTAGtttacagagaaaaagaaaatctgtttggTAAAATATATGGATGAGGCATTTACTAACTTAATCTCTTCCTGAAGCattgtgggggtgtgtgtgggtgtgtgtaggcgtgtgtgggtgtgagcACATGCTTCTCCAGTTGGACTGACCATTATCCATGATCAGACtctattaacattttaagaaaCTTGGCCCTAAGCTGAGCgtagtgctgtgttgtgtagcaAATATCTACAGTACTCCTGAGTTGTAACACTAAGTTATTGAGTTGTCGTCACTGGGTTATAGAAAGCTCCCCAGACAAGCCCTTCGCACCCCGATACGCGTCTCTGTCGGCTGCTGCCTTCCTCTGCACAATAATAAGCTGTTGTCTTCACCAACGAAAGGGTGTCTTAATAAGCTCATCTTGAAAGACATAAATGAAGCGACCTGAGACCAGcttttttttgcaaattatgCTAAACAAGAGGAAGTGGAGAGTCCAGAGCAGGAGATGGAGGTgaagaatttgtattttgttatttaatactaaaaaagtttaatttgtgaCCTGACTCAGGGTGGTGCAAAAGTCCAGCCCTGTAGAAACTctaataagaaataatatattttgttaacaCTAGATTGTGTGGCccaatttaatatgaaatagatattcaattgaTAATCAATTAGCATTccactaattaattaaacttcagTAGAATGTGCTGACCAACCAACTGTATAGAGTTCTCTGACTGCATTGGGTTTTCAGCCTGTGTGTCTATAACTGACGATGTCGGcttgttatttattgatgtcACATATTCCACAAACTACGTGTTGTCGCACCACACAATGATACAATGAGAACTAATTTTCtcataatttaatgtttacgGCATTTCTCATCTGCTGATGTGATGtttatgtgcttttatttttaatggaaatgtcaccatgttttggaaaatacaaattgtcCGTAAATGAGGCTTTTGCTGGGAGCGGATGTTTCGAGATGCGCACAAGTATCGAGTCTTGGATCACGTACAATAATAAAGGTCTTGATTCGTGCCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54935 lncRNA upstream 23311 30063408 ~ 30065492 (+) False AMCG00013382
TU54727 lncRNA upstream 642105 29434050 ~ 29446698 (+) True G43895
TU54684 lncRNA upstream 886082 29179098 ~ 29202721 (+) True G43855
TU54679 lncRNA upstream 910537 29177051 ~ 29178266 (+) False G43853
TU55048 lncRNA downstream 252354 30342469 ~ 30343923 (+) False AMCG00013399
TU55072 lncRNA downstream 336509 30426624 ~ 30430649 (+) True AMCG00013408
TU55089 lncRNA downstream 365557 30455672 ~ 30457671 (+) True G44182
TU55241 lncRNA downstream 644421 30734536 ~ 30734795 (+) True G44306
TU55242 lncRNA downstream 646694 30736809 ~ 30737487 (+) True G44307
AMCG00013382 mRNA upstream 14055 30063380 ~ 30074748 (+) True AMCG00013382
AMCG00013377 mRNA upstream 27250 30046238 ~ 30061553 (+) True AMCG00013377
AMCG00013380 mRNA upstream 43303 30033411 ~ 30045500 (+) True AMCG00013380
AMCG00013381 mRNA upstream 64549 30016223 ~ 30024254 (+) True AMCG00013381
AMCG00013378 mRNA upstream 73339 30011468 ~ 30015464 (+) True AMCG00013378
AMCG00013387 mRNA downstream 74939 30165054 ~ 30167818 (+) True AMCG00013387
AMCG00013397 mRNA downstream 96725 30186840 ~ 30194163 (+) True AMCG00013397
AMCG00013398 mRNA downstream 117958 30208073 ~ 30217024 (+) True AMCG00013398
AMCG00013396 mRNA downstream 131362 30221477 ~ 30229021 (+) True AMCG00013396
AMCG00013394 mRNA downstream 166168 30256283 ~ 30263941 (+) True AMCG00013394
TU54850 other upstream 160106 29921067 ~ 29928697 (+) False AMCG00013375
TU54772 other upstream 429855 29640623 ~ 29658948 (+) False AMCG00013364
TU54615 other upstream 984226 29104289 ~ 29104577 (+) True G43802
TU54454 other upstream 1600020 28484273 ~ 28488783 (+) True G43682
TU54319 other upstream 2152865 27934074 ~ 27935938 (+) False AMCG00013310
TU55045 other downstream 128795 30218910 ~ 30222209 (+) False AMCG00013396
TU55098 other downstream 400712 30490827 ~ 30495656 (+) True AMCG00013416
TU55111 other downstream 473253 30563368 ~ 30568219 (+) True AMCG00013417
TU55261 other downstream 686736 30776851 ~ 30777169 (+) True G44325
TU55551 other downstream 1814853 31904968 ~ 31911801 (+) True AMCG00013468

Expression Profile