RNA id: AMCG00013389


Basic Information

Item Value
RNA id AMCG00013389
length 2509
RNA type mRNA
GC content 0.56
exon number 7
gene id AMCG00013389
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30091862 ~ 30100704 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACTCGGGGGGAGGTCAGTTGGCCAGGGAGAAGCTGCTGGAATTCGACCCAGAGAACTCGGGCTATATCAGCACAGAGCGGTTCCGCGGCCTGCTGGAGACCCACGGCGCCGAGCTCGACCCGCACAAGCTGGCAGTGCTGCTGGCGCTGGCGGACAGCAACGCCGACGGCAAGATCAGCTACCAGGACTTCGTCAACTTGATGAGCAACAAGCGCTCGAACAGTTTCCGGCGCGCAATACTGCATGGTGGGCGGGCAATGGCGGGCGGCGCCCTGGGCAAGGAGGTGGGGCTCAGCCCGGCCCAGCGGCTGGTCCGGCACGTGGCCCACGAGACGCTGCCCCGCGAGATCGACCGCAAGTGGTACTACGATAGCTACACCTGCTGCCCCCCGCCCTGGCTCATCCTCGTGGCGGTGTTCGTGTACTACGGGTTGCTGCTGGACCGCTGGGTGCTGCAGGTGTCCCACCCGCTGTTCATGAAGGGGCCCCTGGTGTACCACCCCCAGCTGCGGGCGCAGGCCTGGCGCTACCTGAGCTACGTGTTCATGCACGCAGGGCTCCCTGGCCGTGTCGGTGGCTGACATGACGGCGCCCGTGGTGGGATCGTCCGGAGGAGTCTACGCCCTCGTCTCTGCACATCTGGCCAACGTCGTCATGAATTGGTCGGGGATGAAGTGCCAGTTCAAGGTGTTTCGCATGGCCATGGCGCTGGTGTGGATGAGCGTGGAGTTCGGCCGGGCCGTATGGCTGCGCTTCTACCCGCCCGCCTTCCCGCCCTGCCCCAACCCCAGCTTCGTGGCGCACCTGGGCGGGGTGGTGGTGGGCGTGACGCTGGGCGTGGTCGTGCTGCGCAACTTCGAGCAGCGACTGCAGGACCAGTCGCTCTTCTGGATCTTCCTGTTCGTCTGCGGTGTCTTCGTCCTCTTTGCCGTCCTCTGGAACGTCTTTGCCTACAGCCTGCTGGACCCCAGGCTCCCCCCACCGCcctgagagagagcagagccgtggggagagggggaaggaagGTACGCGAGGGGAGagtggaggaagagagagagcgagagagagagggaaggaggtgGGGTGAGAAGGGGGACAGAGGTGATGATCCTTctcaccccctcctcctctccgcCCTCCGACTCCAACGTTGTGAGGAAAACGCACTGAAGCTCACTGCCTCCTTGTGAAAACTCTCCAGGACCGACCCCTCACACCCCTCACAGAGGTCCAGCACACCTGGAGGCTCCGCCTCCTGTCACAGGTACCTCACCTGGCCATGGGAGTCCGCTTCTGCAACACGGCGGGACGAGAAATCCACGGTTACCCTGCAGTGTGGGTGTTGGGACCACGTGGAGTTTTGATTGgatatctatttttaaagagCAGAGTAACTGTCTATTTTATCTCTGTATAATGGGCCCAGTCGCCCTGCGCGGCTACAGTCCAACCAAGTCCAAACAGTATTCAAAGCTACCCTCTCGCTTCTCTCGTCTCGCTCAGTATTTGTGCAGCATGACCTTATCACACCGTCATTTTGTCAgctttagctttttatttttgtttttccctgctTGTTTTGGGTTGggaagtgggggggtggggaagcCTTATATGAATGCAGACCTCAGATGAACACTTCTGTACATGAAAGTGCCAAACCTCAGCAGGGCACAGGATAAAACTCCACAAAGTGTGTGTTTGCGCATGTGTGTCTGCGAGGGAATGAGAGAAGCATGTGCTATTCTTGTGTCCAATGATATcatattcaggtttttttttattcttttatgcTGTCTTACCTCCCAGACCATTGCAATGAATGCCAAAAATGTGTCGGGCTGCATTATTGTCCACAAGGCCTCTGGGACTTTATCGTTTCACGCACTtctcaaagtgttttttcatttttgtttgtcatGCGCAGttgagcagtgtgtgtgtgtttgttttgaagaaggTGCAGTTGTCAATCTTTTCTCCAGCAGCAgttccaaccccccccccacagcacagCTCTTATCAAGGCTGATTCATGACTCGAACCCATGTCTCACACTTAGCCAGCTTGTTGCTGAGGACAAACCCCCAGATTATTATTTGGTGGCTGTCAAACAGATCAGTTTCCTTCGTAGACGTCCCCTTGTCTGGTGGCATGTCACTCGTGTTGCAATAGAACGCACCACAGAGCTGAACTGGTGGCTGCACTATGAGGTCCCTTGGATGGTGCAGCTCTGCCTTGAGGTCTCGCTCTGCTATCATAGCAATGCATCGCACTACCGCACCCAGGAAGTATGGTCTTCATGTTTTCATGTAACTGAAGTGGCCCACTGTTTTCACATCAGCTTACTGCCAGCAGAATCACTGAATAAAAGCATTcgtcataataatacaattcaatctTGAATAACTTGAAGATGTTTTGTAACTTGGGACTATCTGCTAATATACACAAAGGGCTACGACGCTGCACCTACTCTCTGGAGACTGAcaacattgtttctt

Function

GO: NA

KEGG:

id description
K02857 RHBDL1_2_3; rhomboid-related protein 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54958 lncRNA downstream 1715 30088803 ~ 30090147 (-) True G44086
TU54905 lncRNA downstream 30228 30040205 ~ 30061634 (-) True AMCG00013384
TU54896 lncRNA downstream 63632 29926383 ~ 30028230 (-) True G44034
TU54897 lncRNA downstream 81162 29950840 ~ 30010700 (-) False G44034
TU54893 lncRNA downstream 147275 29939148 ~ 29944587 (-) False G44034
TU55012 lncRNA upstream 72788 30173492 ~ 30175306 (-) False AMCG00013390
TU55141 lncRNA upstream 206322 30307026 ~ 30310766 (-) True G44230
TU55124 lncRNA upstream 283982 30384686 ~ 30455606 (-) True G44213
TU55187 lncRNA upstream 433267 30533971 ~ 30539317 (-) True G44261
TU55177 lncRNA upstream 439609 30540313 ~ 30542858 (-) True G44256
AMCG00013386 mRNA downstream 8421 30080614 ~ 30083441 (-) False AMCG00013386
AMCG00013384 mRNA downstream 44243 30042590 ~ 30047619 (-) False AMCG00013384
AMCG00013385 mRNA downstream 88980 29991300 ~ 30002882 (-) True AMCG00013385
AMCG00013376 mRNA downstream 156692 29931650 ~ 29935170 (-) True AMCG00013376
AMCG00013372 mRNA downstream 288619 29796583 ~ 29803243 (-) True AMCG00013372
AMCG00013391 mRNA upstream 17096 30117800 ~ 30126501 (-) True AMCG00013391
AMCG00013393 mRNA upstream 25993 30126697 ~ 30153358 (-) True AMCG00013393
AMCG00013392 mRNA upstream 54558 30155262 ~ 30164478 (-) True AMCG00013392
AMCG00013390 mRNA upstream 67277 30167981 ~ 30184424 (-) True AMCG00013390
AMCG00013405 mRNA upstream 185938 30286642 ~ 30290488 (-) True AMCG00013405
TU54953 other downstream 8517 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other downstream 8517 30081036 ~ 30083345 (-) True AMCG00013386
TU54894 other downstream 81162 30006764 ~ 30010700 (-) False G44034
TU54700 other downstream 837546 29253396 ~ 29254316 (-) True G43869
TU54456 other downstream 1623956 28467312 ~ 28467906 (-) True G43684
TU55007 other upstream 65113 30165817 ~ 30169136 (-) False AMCG00013390
TU55119 other upstream 187588 30288292 ~ 30290867 (-) False AMCG00013405
TU55155 other upstream 299183 30399887 ~ 30423025 (-) True G44243
TU55165 other upstream 355023 30455727 ~ 30459331 (-) True AMCG00013409
TU55166 other upstream 376434 30477138 ~ 30478194 (-) False AMCG00013412

Expression Profile