RNA id: TU55007


Basic Information

Item Value
RNA id TU55007
length 2611
RNA type TUCP
GC content 0.58
exon number 3
gene id AMCG00013390
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30165817 ~ 30184424 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGCTGAGGACGGGGCGGCCCGGGACATGCAGGCGGCCGTGGAGAGCCTGAGTTTCCGGAGGTGCCGGGCGGCCGTGTCTGAGGCCTGGCAGGAGGCCCGGCAGCTGAGCGGAGAGCCAGGCCTGCAGACCATCGAGGAGCTGAGCCTTCCTGTGGCCCCCCACCGGCAGGGCTTCAGCTATGGTCAGAGGGACCCCTGCGACCCCAGCATGCTGCGGCGGCGGCGCGAGGTGCTGCAGTCGGTTGTCTCCAGCAAAGGCCTGGTCTCTGTGGGCAACCGGCAGGCCGCCGCCCTGGACTACCTCCCCGCCCTGCGCTCCATCTGCCGCGCCGAGAAGACGAAGGAGAGAGGCAGACTAAAGAGGAGGTTCCTGCACTACCTGGATGGCGTTCACCTGAGCCTGCCCAAGGGTGCCCTGGAAACGCTGGCGGCCGACTTCCCTTAGCGTGTTCGCCGGAGCGTCTGCCCAGCAGCTGCCCTTGTGCTTCCCCAGGCTGCGTCAAGCTCTTGTACAGTAATATAACGCACACTGAAAGTGCCAGTGATTTCattttggattattttattatataaatgtatgttggTGTCTGTTTTTAATGGTAGCTGTCGACAAACCTGGGCTATGATTCAGGAGTGCGAGggtctactttttttttttttttttttaaaaagatgttttatataaagaaataaatgttgtttgacagcaaaaacatttctataaagtcacatgtacatttttttttattaaacctaTGAAAGTTTaacattagaaaaaataaaatggatctTGTTTCTGTGGGAGACAAATACAGTGTGTAGAAATTGTGTAGAGGACTCTGGGAGGGGGGCAGCAGACCACACTGTCCAGTGGGGCACCCCCACCACCGCGCAGTGTGGCCCGACCCTGGGGCTCTGTTATCTGGGTACCTTTTCAAGAGCAGCTGTTGATTTAATACATAAGAACAACATTTCAAAAGACGTGTTGGTACAATAACTGCAACCTCCGGCCTCGGTTCTTAATTAAACCGGTTCGTTGAGGGCCAGTGGCACATGTGCTGTGAGGGCATGTCTTATTTATCGGACAAAAATGATACGGCAGGGACTGGGTAATTGAGTCGAACACCCACACTGGCATAACCAGCTGTGTCTCTGTTGGGTGCGGTGACGGTCTGGGTGCCACGCTGTCAATCCGGTCTAGCTGTCACTCAGCAGCTCATAGAAGGCCAGGGCCTGCAGCACTGCATCACACATCTCCTCCCCCTGGTTCCAGCTGTGCGGGCGGAAGGCGTTCCTGTACCGCACCAccagggtgggggggaaggcCAGGCGGGGGCCACTGCGCCCCACCGAGTCTGTCATCAGCTGCTGCACCAGCTGGGCGCCGCTGGTCCTCGAGTCGCCCACGATGAGGCCGAAGTGCCGCCCCACCGCCATGCGCATCATGTTCAGGACCCTGGGCACCCCCCCACTGTCCCCGGCCCGCCCCGCCAGCAGCGCAAACAACATCGCCTCCACCGTACGCATGTGCACCGTCACCGGGAACAGCGTGGCGCTCTGCAGGGACATCCCCGGCTTCTCCACCACGTAGAAGTCCGCCTCCGGCATCCGGTCAACCACCGCGCCGACCTGCAACGGCCAGGACACATGACAGAAGGAACACACAAGTGAAGTAGTTTGAAGGGAGGTGACTGGTGGCATCACTAATACAAGAGGGGTACAGAGTGGCTGTAGGGCATCACACTCACGTCCTCCAGGTACGAGGAGGCCAGGTAGGTGCCCTTCATGAAGTGCTGGCACTCCTCCTGCTGCCAGTCCTGCACGCAGGGGCTGCGGTCCACGTGAGCCCAGGCGATCCTGCTGGTGCCACACACGATGGACACGATGCTGCTGGCTTCCTGCGGCACAGAGGGTCACAATAAAGCCACACACCAACGGCAGGAGGGCCGTTCCCATTCTAGGTTACATTCTCATGGTGCAACAccgatttattaaaatatttattcatttctatCAATTTGAAGATATTAGTTTTAAACCACGCATGCCTGTTTCCCAGACTGCAGTTGGGTGCCACTGCTCTACAGTAGTCAACCCGGAGCagcatgaatgaatgaatgaatgacaatGAGACCAGGCTCTGGCACCTGCAGTGTCTTCCACTCCAACTCCGGCTTGACGAACTTGGCGGTCCGCAGCGGCTGGGCCTTGGGCTGCCTCTTCTCCTCGGGGTGCAGGATGGAGTGGAACACCACAGCGGCCGTCTTGTGCTTCAGCAGCGGCACGTTGACCACGCTCTCCAGGTCAGGGAACGGCCCGTGCCGTGCCCGGTACTCCATGATGTTGGCGGACTTCCTGCCACGCAGCAGCTTCACACCGGCCAGCTGGCTCTCAGGGGCATGGTTGAGCACCTGCAGGATGGCCGTCCGCTGCGCCTCTGTGTAGCAGGAGTCCAGCGAGGGCTGAGCCCCGCCGCTCCGCTCTGGGCTGTGGCTTCTCCGGCAGCAGGTGCAGTGCAGGAAGCGCGGTGGCAGCTTTGGTGGGGTGGCCATGGGGCTGCGGAACAAGCCATGCCACCCTGCAGtgggggagggaaagagagaaagagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54958 lncRNA downstream 75670 30088803 ~ 30090147 (-) True G44086
TU54905 lncRNA downstream 104183 30040205 ~ 30061634 (-) True AMCG00013384
TU54896 lncRNA downstream 137587 29926383 ~ 30028230 (-) True G44034
TU54897 lncRNA downstream 155117 29950840 ~ 30010700 (-) False G44034
TU54893 lncRNA downstream 221230 29939148 ~ 29944587 (-) False G44034
TU55012 lncRNA upstream 4356 30173492 ~ 30175306 (-) False AMCG00013390
TU55141 lncRNA upstream 137890 30307026 ~ 30310766 (-) True G44230
TU55124 lncRNA upstream 215550 30384686 ~ 30455606 (-) True G44213
TU55187 lncRNA upstream 364835 30533971 ~ 30539317 (-) True G44261
TU55177 lncRNA upstream 371177 30540313 ~ 30542858 (-) True G44256
AMCG00013392 mRNA downstream 1339 30155262 ~ 30164478 (-) True AMCG00013392
AMCG00013393 mRNA downstream 12459 30126697 ~ 30153358 (-) True AMCG00013393
AMCG00013391 mRNA downstream 39316 30117800 ~ 30126501 (-) True AMCG00013391
AMCG00013389 mRNA downstream 65113 30091862 ~ 30100704 (-) True AMCG00013389
AMCG00013386 mRNA downstream 82376 30080614 ~ 30083441 (-) False AMCG00013386
AMCG00013405 mRNA upstream 117506 30286642 ~ 30290488 (-) True AMCG00013405
AMCG00013404 mRNA upstream 153129 30322265 ~ 30332700 (-) True AMCG00013404
AMCG00013403 mRNA upstream 164312 30333448 ~ 30340461 (-) True AMCG00013403
AMCG00013410 mRNA upstream 261528 30430664 ~ 30436741 (-) True AMCG00013410
AMCG00013409 mRNA upstream 288267 30457403 ~ 30464091 (-) False AMCG00013409
TU54953 other downstream 82472 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other downstream 82472 30081036 ~ 30083345 (-) True AMCG00013386
TU54894 other downstream 155117 30006764 ~ 30010700 (-) False G44034
TU54700 other downstream 911501 29253396 ~ 29254316 (-) True G43869
TU54456 other downstream 1697911 28467312 ~ 28467906 (-) True G43684
TU55119 other upstream 119156 30288292 ~ 30290867 (-) False AMCG00013405
TU55155 other upstream 230751 30399887 ~ 30423025 (-) True G44243
TU55165 other upstream 286591 30455727 ~ 30459331 (-) True AMCG00013409
TU55166 other upstream 308002 30477138 ~ 30478194 (-) False AMCG00013412
TU55168 other upstream 314383 30483519 ~ 30486331 (-) False AMCG00013411

Expression Profile