RNA id: TU55012


Basic Information

Item Value
RNA id TU55012
length 950
lncRNA type sense_over
GC content 0.67
exon number 6
gene id AMCG00013390
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30165817 ~ 30184424 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAgggggcagggcagggggggCCGCGTGTCCAAGAGGCGGCGGGGGGCCCAGACCACCATCGTGATCGAGGACGACGCAGAGGCCGGGTCTGCGCTGTTGGCCCAGGGGTCCGGTTCGGCCGAGGAGCCCAGCGGGAAGGGCAGCTTGAGCCGGCCGTGCAGGGGCAGACCGGGCAGAGATGCCCCCGCCCTTCACACCCCTGTGCAGGACTGCCAAACCATCCTGCTGGACGACAGCCCCTCCCCAGGACCCCCCAGGGCAGATGGTGACGCTGGCCGCGAGGACGTGCTGTGGACGGAGAAGTTCCAGCCACAGCACTCCAGTGAGGTGCTGGGGAACTCCGGCGCAGTGAGGCGGCTGCACAGCTGGCTGAAGGAGTGGAAACAGAGGGCCGACCGTGAGGAGAGGAGGAATCGGACAGACAAGAAACCGGAAGAGGACAGTGTCGACTCGTGGGACTGCGGAGACTTCCGGGAGGACGACGAGGACGGGGAAGAGCAGCTGTGCAATACTGTGCTGCTCACCGGCCCCCCCGGCGTGGGCAAGACCGCCGCCGTGTACGCCTGCGCCCAGGAGCTGGGCTTCAAGGTGTTCGAGGTGAACGCGTCATCGCAGCGCAGTGGCCGGCAGATCCTGTCCCAGCTGAAGGAGGCCACCCAGTCACACCAGGTGGACGTCGGGGGCCCCAACGCACACAAGCCCTCCTACTTCAACAGCCACAGCTGCGTCAAGAGCAGCTCCTCTCCACGGAAGACAAATTCTCCTCGGAGGGTCACTGCCTCTCCCAGGAAGCCCCCCCAGTCTCCTCGGGGTGCCAAGAGGGGCAGCCTGGCCCCCACCGCCCTCGCCAACTTCTTCAAGCTCAGCGGCCGACGGAAGGGCGGAGAGAAGGACGAGCCTCCAGAGAAAGAGACCCATCCCCGGAAGCCACCCAAAGTGAAGGACAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54958 lncRNA downstream 83345 30088803 ~ 30090147 (-) True G44086
TU54905 lncRNA downstream 111858 30040205 ~ 30061634 (-) True AMCG00013384
TU54896 lncRNA downstream 145262 29926383 ~ 30028230 (-) True G44034
TU54897 lncRNA downstream 162792 29950840 ~ 30010700 (-) False G44034
TU54893 lncRNA downstream 228905 29939148 ~ 29944587 (-) False G44034
TU55141 lncRNA upstream 131720 30307026 ~ 30310766 (-) True G44230
TU55124 lncRNA upstream 209380 30384686 ~ 30455606 (-) True G44213
TU55187 lncRNA upstream 358665 30533971 ~ 30539317 (-) True G44261
TU55177 lncRNA upstream 365007 30540313 ~ 30542858 (-) True G44256
TU55180 lncRNA upstream 365362 30540668 ~ 30562691 (-) False G44256
AMCG00013392 mRNA downstream 9014 30155262 ~ 30164478 (-) True AMCG00013392
AMCG00013393 mRNA downstream 20134 30126697 ~ 30153358 (-) True AMCG00013393
AMCG00013391 mRNA downstream 46991 30117800 ~ 30126501 (-) True AMCG00013391
AMCG00013389 mRNA downstream 72788 30091862 ~ 30100704 (-) True AMCG00013389
AMCG00013386 mRNA downstream 90051 30080614 ~ 30083441 (-) False AMCG00013386
AMCG00013405 mRNA upstream 111336 30286642 ~ 30290488 (-) True AMCG00013405
AMCG00013404 mRNA upstream 146959 30322265 ~ 30332700 (-) True AMCG00013404
AMCG00013403 mRNA upstream 158142 30333448 ~ 30340461 (-) True AMCG00013403
AMCG00013410 mRNA upstream 255358 30430664 ~ 30436741 (-) True AMCG00013410
AMCG00013409 mRNA upstream 282097 30457403 ~ 30464091 (-) False AMCG00013409
TU55007 other downstream 4356 30165817 ~ 30169136 (-) False AMCG00013390
TU54953 other downstream 90147 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other downstream 90147 30081036 ~ 30083345 (-) True AMCG00013386
TU54894 other downstream 162792 30006764 ~ 30010700 (-) False G44034
TU54700 other downstream 919176 29253396 ~ 29254316 (-) True G43869
TU55119 other upstream 112986 30288292 ~ 30290867 (-) False AMCG00013405
TU55155 other upstream 224581 30399887 ~ 30423025 (-) True G44243
TU55165 other upstream 280421 30455727 ~ 30459331 (-) True AMCG00013409
TU55166 other upstream 301832 30477138 ~ 30478194 (-) False AMCG00013412
TU55168 other upstream 308213 30483519 ~ 30486331 (-) False AMCG00013411

Expression Profile