RNA id: AMCG00013391


Basic Information

Item Value
RNA id AMCG00013391
length 1547
RNA type mRNA
GC content 0.58
exon number 10
gene id AMCG00013391
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30117800 ~ 30126501 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGCTACGTTGGGGTGGCGGTGCTGACGCGCAGCCGCGCCGGGAATGCAGAAGCGCCCGTGAGCGCCGCGAGGAGGAAGTGCGCTGCGGACCCGCACCGGCGCGAGAGCCCCCCGAGCCCGGCCGCCGTCCCCATGGCGACGCAGGAGCACGAGCTGGTGTTCGAGAGCTTCTTGAAGAAACGCAAAGACAagctgTCGCACCTGCGAGGCCAGTACTACATCTACACGGTGCAGTCAGTACGTGAGGTGAAGACAGATGACAGCAAGCAGTTCATGTTTGAGATCACCATGAAGAACGGCAAGAAGAAGCTGCTGGCTGCAGCGACGGAGGAGTTGCGCTCAGTGTGGGTCAGCCTGCTGTGGAAGGCCATGCAGCTGCCGGGTCCAGGGAGGACCGACTCTGCCTGTATCTGGCATGACGTGGCAGACCTCACGGTGCGGGGGCGACTCAGCACACACAGCTCGGACTCGGACAGCACACTGGACAGCGACCCGCGCAACTCGGCGCTCCTGGACCCATTTGCCCCCCCACTGCCCACCACTCCGCCCCCCCACAGCGCAGGCAACACCAGCTGCAGCCAGAGGACCAGcactgaggaggaggagcagcacaCAGAGGGTGCCTACGACATGCTCCCACCCACGAGAGgacaggaggaggaggaggaggaggaggaggaggagaaggaggtggAGGGTGGGCAGGAGCTGTACGATGTCCCTGCGTCCTGCCGAGAGGCCAGCGGAGGGGCGGCCCAGAGAAACCGAGTCTTGACAGAAAGCATCTACGATGTGCCGAGGTCTGTGCTGAGGCGGTCATCTGAAGACAGTAAGGGTCTCGCAGGAGCGCCGAGCGGCGGCTCCACCCTGCTGGATGACATCAAGCGCAGCCTGGGCAGCGATCACGTGAGCTGGATCAACGACCCTGGGGAGATGTAGCCTGGCAGGACGGGGGGCTGCTCTCCTCAGCGTGTGGAGAGTTCCTGTAGTCCAGTGATCGCTCAGTGGAGGAGCTGGGGACCACCACCACCAGAGGTCCTGGGCAGTGTGACGCACCTCAGCTCTCTCCCCCAGCCTGTGCCGAGGACCCAGCATGGCCAGAACTGCACCTGCACACGCCTGTGTGTCCACAGTGTCCACGCTCGCCTGAGAGTGGGGTCCAGCAGCTGGAGGTGGGTGATATACAGCATCATGCAGCTGATCACAGCTGGAGGGGCAGGTTCCTGTCACGGTGCCTTTGTCACTGGACTGCTGGGAAAATAGGAATGGGTGCCAGTCACTAAAACTAATGTATCCATATGaagtatagatatatatacacacacgtttATTATTACAGATTGGTACTTGTATTGTTCTATATGGGGTCTTTGTATTTTATCTGGTGAATTGGGTCTTTTTCCACTTATGTGTCTGTTCGATCAGTTAGtaagatgtttttataaatcTACACTACTGCTACTTTTTGGGGCGGGTGGAGGGGtgacaaatgtttgttttttaaagcaaagtctttgttacaataaaaagaaaaaagaaaatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54958 lncRNA downstream 27653 30088803 ~ 30090147 (-) True G44086
TU54905 lncRNA downstream 56166 30040205 ~ 30061634 (-) True AMCG00013384
TU54896 lncRNA downstream 89570 29926383 ~ 30028230 (-) True G44034
TU55012 lncRNA upstream 46991 30173492 ~ 30175306 (-) False AMCG00013390
TU55141 lncRNA upstream 180525 30307026 ~ 30310766 (-) True G44230
TU55124 lncRNA upstream 258185 30384686 ~ 30455606 (-) True G44213
TU55187 lncRNA upstream 407470 30533971 ~ 30539317 (-) True G44261
TU55177 lncRNA upstream 413812 30540313 ~ 30542858 (-) True G44256
AMCG00013389 mRNA downstream 17096 30091862 ~ 30100704 (-) True AMCG00013389
AMCG00013386 mRNA downstream 34359 30080614 ~ 30083441 (-) False AMCG00013386
AMCG00013384 mRNA downstream 70181 30042590 ~ 30047619 (-) False AMCG00013384
AMCG00013385 mRNA downstream 114918 29991300 ~ 30002882 (-) True AMCG00013385
AMCG00013376 mRNA downstream 182630 29931650 ~ 29935170 (-) True AMCG00013376
AMCG00013393 mRNA upstream 196 30126697 ~ 30153358 (-) True AMCG00013393
AMCG00013392 mRNA upstream 28761 30155262 ~ 30164478 (-) True AMCG00013392
AMCG00013390 mRNA upstream 41480 30167981 ~ 30184424 (-) True AMCG00013390
AMCG00013405 mRNA upstream 160141 30286642 ~ 30290488 (-) True AMCG00013405
AMCG00013404 mRNA upstream 195764 30322265 ~ 30332700 (-) True AMCG00013404
TU54953 other downstream 34455 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other downstream 34455 30081036 ~ 30083345 (-) True AMCG00013386
TU54894 other downstream 107100 30006764 ~ 30010700 (-) False G44034
TU54700 other downstream 863484 29253396 ~ 29254316 (-) True G43869
TU54456 other downstream 1649894 28467312 ~ 28467906 (-) True G43684
TU55007 other upstream 39316 30165817 ~ 30169136 (-) False AMCG00013390
TU55119 other upstream 161791 30288292 ~ 30290867 (-) False AMCG00013405
TU55155 other upstream 273386 30399887 ~ 30423025 (-) True G44243
TU55165 other upstream 329226 30455727 ~ 30459331 (-) True AMCG00013409
TU55166 other upstream 350637 30477138 ~ 30478194 (-) False AMCG00013412

Expression Profile