RNA id: AMCG00013392


Basic Information

Item Value
RNA id AMCG00013392
length 2784
RNA type mRNA
GC content 0.53
exon number 12
gene id AMCG00013392
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30155262 ~ 30164478 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAACCTACAATAATCGTTCTTTTGTGCTTCTGTGCATTGTCCCGGTTTGTGTGTAGAGGCGGTGTAAGAGGAACCGGCTCCGGGCGGCTGTGCGCAGAGTGAAGTATCCGCCGCTTCGCTACTTTCGCAAACTCGTTCATTGTCGCTGTCGCCCCGCAACGCGCACTCACTTCCTCTGGCCAGACAGGAGCGCACACCGGCTCTGCGCATGCGCATGCGGGAATCACAGCTGCGTCTTCACACGGAGTCGGAGCGGAGAGCAGCCCCGCCCCGCACCGCCCCGCATCGCCCCGCACCGCCCCGCACCGCCCCTACTGTCCTCGGTGCCCGGAGAGCAGGGAGTCAAAGGAGAGATCGGTAAAGGGGTTGAGGGGTGGGAGAGCCACACAGAGAATGACGACACCTGCCTGGCACACAGGTGAGACCGAGGGAGCGAGCGACGACACCTGCCTGGCACACAGGTGAGAGATGGACTTCTCTTGTGCCTGGAAGTCGCTGGAGATGTATGGACCTGCTCGGCGACCAAGGATGCAATAGACTCTCCCACACTGCTCTGCGCCGCTTGGACAGTGCTCTGGACTTTCTGTATAAATACattccaatttaaaattgtttgtattgtattactgtgTGTGAAGAGGATGCAGCGGTGACTATGAGGCGCCCTGCCTCGGCACGGACCTCGGTCGGCAGCAGACACTGAGAGACCCGGGCGGGAGTGGGAGTGTGTGGGACCCGGAGCAGCAGCCATGGCTGACCACGACCACAATAAGAAGCAGCTGCTGGAGTTATTGAAGCAGCCCGGCAACGGCGCCTGCGCAGACTGCGGGACGCGGGACCCGGACTGGGCATCCTACAAGCTGGGTGTGTTCATCTGCCTGAACTGCTCGGGGACACACCGCAACCTGCCAGAGGTCAGCAGGGTCAAGTCCATTCGGCTGGACTTCTGGGATGACAGCCTGGTGAAGTTTATGAAAGCCAATGGGAACTCCATTGTGAAGGATACATACGAGAAGTCCGTCCCGGCGTTCTACTACCGGCCCCAGGAGAGTGACTGTCCAGTGCTGAAGGAGCAGTGGATCAGAGCAAAGTACGAGAGGAATGAATTCACTGGGGACAACGCCATGGCCCAGGAGGCCTACAGCTCAGGGTCCTACGAGGGGTTCCTGTGGAAGAAGGGGCGCGACAACGGGCAGTTTCTACAGAGAAAATTCATCCTGAGCGAGAAGGACTTCACTCTGAAGTACTACACCAAGGAGGAGTCCAAAGGTCCCAAAGCCGTCATCTACGTCAAAGACCTCAATGTCACCTTCCAGCCGGAGAAGATCGGCCACGCCCACGGGCTGCAGCTCACCTACCTGCAGGACGAGCACACCCGGAACATATTTGTGTACCACGACAGCGGGAAGATTGTGAACTGGTTCAACGCCATCAGAGCCACGCGCTTCTCCTACCTGAGGACTGCCTTTCCCACCGCCAGCGATAGCGAGCTGAAGCCCTGGATATCTCGGAATTACTTAAAGGAAGGCTACATGGAAAAGACCGGTCCGATGCAACGGGAGTCCTTCAAGAAGAGGTGGTTCATCCTGGACTCGCAGGATAGGAAGCTGCTCTACTTCAAAGACCCACTGGACGCAGTAGAGCTGGGCGTGGTGTTCCTGGGCCCGGAGGAGCACGGCTACGCGGTGCGGGACAGCCAACCACGGACGGCGCGCAGGAACAAGTGGAAGTGTGGTGTCGCCATGGAGACGCCGGACAGGGCGTTTCAGTTCATGTGTGAGAACGAGCGGGAGCAGCGCGAGTGGATGGCGGCACTGCGGCAAGTCATCGCCAGACCCATGATCCCTCAGGACTACGCCACCGAGGCCAATGTGAGACGGAGACGGTGACCCTgcaagggagggagagaagagtcGGACAGCGGCACCGTGGTGGACACACTTCCAACTGGACCAGAGGGGTTAGCTCCGCAGCGGCCGTGGGCACTGCTGGCTGGCACCACTTCACAAagcctttaaatcatgttaaaatggTGCCTAGAGCCCCgagtaaagattttttttacatgacCAAGTTGTTCCCTGGGGGGTCCCCAAGTGTGTAACGTTTTCTCTCAGTGCTGCCCTTGTAGGCTGGTGGTGGTATTTTGGTGACTTCCCACCAGTGGTACCCAAACACCGTCCTGGAGCCCCGATCCAGTACGTTTTGTCAGTCACTGTAAATCGCTAATTTCGACAGATTAGGAACATGtggaagttattgatcaattaagcaattaacttgttcagttaagggaattctggtcactgagggctgaaaagggtggttcattttctttataccaaGTCTCTACAGAACTTCATTTAACAAgtcacctgcttaattgatcacattgaaatggcTCCAGGTGTTCAGAAATTGATTATTAAAGGTTATCTGTGGGAGCGGGGCCTCGAGGACGGGATTTGGGCAGCACTGCGTCACACACTTTCATTTCAAGGCAGCTGGGAAGTGTTTTGATGGAAACCATGTAAagttgaaaataattttaattcggaacattttattgtaattgtaatattacaaataataataaaaacattaggaaaaaaaagagtaataaaacatttgaatccTAACCACTTTCATCCAGAgcccatttaaaaacactatcGTTACAGTCATATGTCACActgcattgtatttataataaaatgtttacaatcttaattttttaattcttaataaataaatctgaattgaTAAAATAGTATAGTATTCCC

Function

GO: NA

KEGG:

id description
K23781 ADAP, CENTA; Arf-GAP with dual PH domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54958 lncRNA downstream 65115 30088803 ~ 30090147 (-) True G44086
TU54905 lncRNA downstream 93628 30040205 ~ 30061634 (-) True AMCG00013384
TU54896 lncRNA downstream 127032 29926383 ~ 30028230 (-) True G44034
TU55012 lncRNA upstream 9014 30173492 ~ 30175306 (-) False AMCG00013390
TU55141 lncRNA upstream 142548 30307026 ~ 30310766 (-) True G44230
TU55124 lncRNA upstream 220208 30384686 ~ 30455606 (-) True G44213
TU55187 lncRNA upstream 369493 30533971 ~ 30539317 (-) True G44261
TU55177 lncRNA upstream 375835 30540313 ~ 30542858 (-) True G44256
AMCG00013393 mRNA downstream 1904 30126697 ~ 30153358 (-) True AMCG00013393
AMCG00013391 mRNA downstream 28761 30117800 ~ 30126501 (-) True AMCG00013391
AMCG00013389 mRNA downstream 54558 30091862 ~ 30100704 (-) True AMCG00013389
AMCG00013386 mRNA downstream 71821 30080614 ~ 30083441 (-) False AMCG00013386
AMCG00013384 mRNA downstream 107643 30042590 ~ 30047619 (-) False AMCG00013384
AMCG00013390 mRNA upstream 3503 30167981 ~ 30184424 (-) True AMCG00013390
AMCG00013405 mRNA upstream 122164 30286642 ~ 30290488 (-) True AMCG00013405
AMCG00013404 mRNA upstream 157787 30322265 ~ 30332700 (-) True AMCG00013404
AMCG00013403 mRNA upstream 168970 30333448 ~ 30340461 (-) True AMCG00013403
AMCG00013410 mRNA upstream 266186 30430664 ~ 30436741 (-) True AMCG00013410
TU54953 other downstream 71917 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other downstream 71917 30081036 ~ 30083345 (-) True AMCG00013386
TU54894 other downstream 144562 30006764 ~ 30010700 (-) False G44034
TU54700 other downstream 900946 29253396 ~ 29254316 (-) True G43869
TU54456 other downstream 1687356 28467312 ~ 28467906 (-) True G43684
TU55007 other upstream 1339 30165817 ~ 30169136 (-) False AMCG00013390
TU55119 other upstream 123814 30288292 ~ 30290867 (-) False AMCG00013405
TU55155 other upstream 235409 30399887 ~ 30423025 (-) True G44243
TU55165 other upstream 291249 30455727 ~ 30459331 (-) True AMCG00013409
TU55166 other upstream 312660 30477138 ~ 30478194 (-) False AMCG00013412

Expression Profile