RNA id: AMCG00013393


Basic Information

Item Value
RNA id AMCG00013393
length 4999
RNA type mRNA
GC content 0.57
exon number 30
gene id AMCG00013393
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30126697 ~ 30153358 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGCTGGACCCGGCCAGGCTGGACTCTGTTACGGGAGAACTGCAGTGCCCGATCTGCTGGGAGACCTTCCGAGACCCGGTGCGGGCCTCCTGCGGGACTCATTACTTCTGCCTGGATTGCATGCACAAGTTTACAGAAGCGAAGAAGTtcaactgctgctgctgtatgGGCCCCTACAACCCGCAGCACCGGCTGGAGGAGACCCTGCAGCGCAGCTTGGCGGAGGTGACGTCGAAGATCAGGACAGAGTCCGCCTCGTGGGAGAAGGACACCATGCGCTGGCAGTTTGGCGAACTGAAGAGGCTGATCGAGGAGAAGGAGAGCGCGGCCCTGTGCGTCCTGAGCCACAGAGAGAGTGCTGCCCAGCAGAGGTCCGACCACGTCCTGACGCGCCTCGGCCGGAGGCTGGACTCGCTGAGGTGCGTCAAGTCCCGGCTGGAGCAGGCGAACCCCGGCAACTGCTCCGCCCTGCTGCAGAGTGTTGGTTTCCGACCACCAGGACCCACAGCCCAGACCCCGCCCGAGGAGATGGAGTGCTCCACTATCCAGGAGCCTGAGAGACCCGCCAATCTGATGCAGTGTTTGGTGCGTCTGTCCTTTAGCCTGGAGCGTGCACACCCGTTCCTGACCTTCTCAGAGGATTTCCGGCGTGTGAGGGTGCGCAAACGCAGCAGGACGTCACCCTGCAAGAACAACTGCTTCAAGACCACCCAGGCCATGGCGGCGCAGGTGTTCTCCCAGGGCGAGCACTACTGGGAGGTGGACACGGCCAGCTGCGTGGCCTGGGCAGTCGGGGTGGCCTATTGCAACCTGGGCCTGGGGGTGACGGTGGGCCGGGACTCCAGGTCCTGGTGCCTGGAGGGGAACACGTCCCAACTGTCTGCCTGGCACGCCAACAAGGAGGTCCTGCTGAGCCGGTCCAAGCCCGGACGGGTCGGGGTTCACCTGCgcatgggggagggggagctgtCCTTCTACTGCATGCCTGGGGCGGAGGAGCCACTGTGGACGTACCAGGCCTGCTTCACCGAGGCGCTGCAGCCCCAGCAGCAATTCTGTCCCTTCGAGGATGCCGTCGACGTCGCTTGGCGTAGGTCAGCCGGAGGAGGCGTGCGCCGGTCGCATCTCCCGCACAATGTCAGGCAGTCGGGGAGCAGCGCAGTAAAACGGCGTAAAAAACCCCACGGTGTTCTGAGTGACAATGTCGCCGCTCGCCACGCCGATAGCTGCCCCGCTGATTTGCGCAGCGAGCGACGCGCGGGGGTCCGGTGGTGCATCGACGGCCTCGCCGCGTCCGGTTTGTCCTACAGCGCGCGCGCGCCGACGCGGACGGGCGGACAGGCCTCGCGCCGCACCGGCACCTCGCGAGCACCGGCAGCGGCTCCGGTCCGCCTCGAGGCCCAGGCCATGCGGAAGGACGTGCGGATCCTGCTGGTGGGGGAGCcCAAAGTGGGGAAGACTTCCCTGATCATGTCCCTGGTCAGCGAGGAATTCCCCGATGAGGTCCCCATGCGTGCCGAGGAGATCACCATCCCAGCAGACGTGACTCCGGAAAGGGTCCCCACGCACATAGTGGACTACTCGGAAGCGGAGCAGTCAGACGAGCAGCTGTACCAAGAGATCTCGAAGgCGAATGTGATCTGCATCGTGTATTCAGTCAACAATAAGAACTCCATTGAGCAGGTGACGAGCCGGTGGATTCCTCTGATCAACGACCGGATGGACAAGGACAGCCGAGTGCCGCTCATCCTGGTGGGCAACAAGTCCGACCTGGTGGAGCACAGCAGCATGGAGACCATCCTGCCCATCATGAACCAGTACACCGAGATCGAGACCTGCGTGGAGTGTTCGGCAAAAAACCTGAAGAACATCTCAGAGCTGTTCTACTATGCACAGAAGGCGGTGCTACACCCCACTGGGCCCCTGTACTGCCCAGAGGAGAAGGAGATGAAGCCTGCCTGTGTTAAAGCCCTGACTCGTATTTTCAAAGTGACAGACCTGGACAACGACGGCATTCTCAACGATGCCGAGCTCAACTTCTTCCAGAGGACCTGCTTCAACACCCCACTGGCCCCGCAGGCCCTGGAGGACGTAAAGAACGTGGTGCGGAAAAACATGAGCGACGGCGTACACGACAACGGCCTGACTCTCAAGGGCTTCCTGTTCCTGCACACGTTGTTCATTCAGAGGGGGCGGCACGAGACCACGTGGACGGTGCTGCGCCGCTTCGGCTACGACGATGACCTGGAGCTGACGCAGGATTACCTGTTCCCCCCGGATTGCGCTCTGTCCCCCGATGAGCTGAAGGACCTGTTCAAAGTCTTCCCCTACATGCCCTGGGGTCCCGACGTCAACAACACCGTCTGCACCAACGACCATGGCTGGATCACCTACCAGGGATACCTGTCGCAGTGGACGCTGACAACATACCTGGATGTGCAGCGGTGTCTGGAGTACCTGGGCTACCTGGGATACTCCATCATCTCCGAGCAGGAGTCCCAGGCCGCTGCCATCACAGTGACCCGTGATAAGAAGATCGACCTGCAGAAGAAGCAGACCCAGAGGAACGTGTTCAGGTGTAACGTCATCGGAATGAAGGGCTGTGGAAAGAGCGGCTTCCTGCAGGCCTTCCTGGGCCGCAACCTTATGAGACAGCGGCAGCTCCGGGAGGATCACCGCTCTTTCTATGCCATCAGCACCACCTACGTGTACGGCCAGGAGAAGTACCTGCTGCTGCACGAGGTGTTCACTGAGTCCGAGCTGCTCTCCGAGGCCGACCTGTCGGACGCTGACCTGGCCTGTGACGTGGTCTGCCTGGTGTACGACTCCAGCAACACCCGCTCCTTCGAGTTCTGCGCCAAGGTCTTCAAGCAACACTTCATGGACAGCAAGACCCCCTGCATGATCGTGGCGGCCAAGTCAGACCTGCACGAGGTGAAGCAGCAGTGTAGCGTCTCGCCCCTGGACTTCTGCCGGAAACACAAGATGCCCCCCCCGCAGGCCTTCACCTGCAACACCTTGGAGATCCCCAGCAAGGACATCTACACCAAACTGACCACCATGGCCATGTACCCCCACGCCCGGTTACGCTGTATGTGCGCCTGCAACAGGTGCACGTTTTGCCTCTGTCAGAACCTCCTCAACTCAGACTTGCTGCAATCTGTAAAGACCAAGCTCTACACCGCTGTGCTGCACAGGTTGGAGGAGCTGTGCGCTGCGCTGCTGGCCGGCGAGGAGGAGGGCAGTTTGGGGCAGCAGGTGCACGCGGTGCGCTCCGTGGAGGAGTCCGTCTACATGGGGTCGTCTCTGGACACCTGCGTGCCGTCCCGTCCCCCGCCCCGGCACAGTGTAGGCGTACACTCCCCACACCCCGACCGTCTCACAGTCCGTCTCTGGGGCTTGGGTTTGTTCACAACGACGCACTCCCTGCTCGTGTCTGCTGAGGCGCTCTGTGtttattttttgtgtgagagtgtgagacaGCGAGTGCATGTTCATGTTCCATTCACTTCTGTGTTCAGCTGTGTACCCCTCGGTCCTGTGTGTGGTCCGCGTCTGTCCGAGGAGGCGGTTCTGTATCGGCTGGCCAGGCAGGCAGTGCTCTGTCACACTAATTTGTACCCCAGCCCAGGCTCTTGTCCTGGCATCCCTGCCTGCTTGTCTGCTTGTGAACACATCTGCAGTCAGTGCCGGTGTCCCGCTGCCCACGCAAGCCTGCGCCGCTCTCGCGTGTCCCCCCCGGCTTCATTTATCTTGCGTTTCTTTCTCCCTCACagGCACGTCACCCAGGCGGACCTGAAGAGCTCCACATTCTGGCTGCGGGCGAGTGTGGGGGCCACCGTGTTTGCCGTGCTGGGCTTCGCCATGTACAGAGCACTGCTCAAACAGCGGTGATCTCGCCATGCAGAACCTAGAGTCAGTTTTGATATCTCCATTAAATTAACCcaattatgtgtatataaatatactcaGAGATCGCTTTGGAGTCTGCAAGAACCTCAACTTTTCACtcgtttttatttaaatgcgcAACAGTTCATTCTGGAGTCTCTCATTAACGTTTGTTGTGTTTAACGGGACTTTGGGCTGATATGATTATAGTctgggattatatatatatttaaaacaggaAGAAATGAGAAACCTCCCCTTGTATTGATGGTGGTTTTAGAGGTGCCCCTCTGCTCCAGTCAGGGTGTCCAAACAGGCCCAGTGGGCCCGGAGAGTCTGCACCGGGACACATGGGCCTCCTGGGACTGCAGACCatgtatataatgtacataGCAGCAATCTCATCTGGATTGTCTGGGGAATTAGACTAAACGAATTTAACGAATATTGCTCTCTATACAAAGGTCAAACTCTGAGCGATCATGGGAAGCTGCTGCAGCAAAGCCAGGGTGCTTTATGTTTGTCAGGATTATTATTTTGCGCTGCATctgtatgaaatgtaatttattaggctgtttttgtttagttttatgaCGGTATGTTTGCGTCTCTGCACCTCAAGGCAGAGGACACAAGGATGAGGTGATTATCATTActgctcattattattattattgataataacaataaagtgTATCAGTATTACTGGTTATTAACAGGATGGGTGTTCAGCGGGGGTCGGGCAGTAGGGGGTCCGGCAGCAGGTCTCacgcttttattttttgcaaaacctTGTAACCCCTCTCAGCCGGGGCCCTGAGCTCTGTATTAACGGCCTGGTGAAATGAGCCGGGCGCACAATCTGCATGTCTGGCCGCTGCATCACACGCACGTCTCCTACAGAGGGGGATACTGCAGACattgcactttcttttttttcttactgttATGATTTGTTATTACAgtttaaagaatacaaaatctgTCACAGTTTGTATTAATGATcttcctctcacacacacaccgccaGCCCCCGGACTGTTTTCTCCGTATTGTGACTTGTTTTTTTGCCctcaacatttacaataaataactgTGTGCTGTA

Function

GO: NA

KEGG:

id description
K07870 RHOT1, ARHT1; mitochondrial Rho GTPase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54958 lncRNA downstream 36550 30088803 ~ 30090147 (-) True G44086
TU54905 lncRNA downstream 65063 30040205 ~ 30061634 (-) True AMCG00013384
TU54896 lncRNA downstream 98467 29926383 ~ 30028230 (-) True G44034
TU55012 lncRNA upstream 20134 30173492 ~ 30175306 (-) False AMCG00013390
TU55141 lncRNA upstream 153668 30307026 ~ 30310766 (-) True G44230
TU55124 lncRNA upstream 231328 30384686 ~ 30455606 (-) True G44213
TU55187 lncRNA upstream 380613 30533971 ~ 30539317 (-) True G44261
TU55177 lncRNA upstream 386955 30540313 ~ 30542858 (-) True G44256
AMCG00013391 mRNA downstream 196 30117800 ~ 30126501 (-) True AMCG00013391
AMCG00013389 mRNA downstream 25993 30091862 ~ 30100704 (-) True AMCG00013389
AMCG00013386 mRNA downstream 43256 30080614 ~ 30083441 (-) False AMCG00013386
AMCG00013384 mRNA downstream 79078 30042590 ~ 30047619 (-) False AMCG00013384
AMCG00013385 mRNA downstream 123815 29991300 ~ 30002882 (-) True AMCG00013385
AMCG00013392 mRNA upstream 1904 30155262 ~ 30164478 (-) True AMCG00013392
AMCG00013390 mRNA upstream 14623 30167981 ~ 30184424 (-) True AMCG00013390
AMCG00013405 mRNA upstream 133284 30286642 ~ 30290488 (-) True AMCG00013405
AMCG00013404 mRNA upstream 168907 30322265 ~ 30332700 (-) True AMCG00013404
AMCG00013403 mRNA upstream 180090 30333448 ~ 30340461 (-) True AMCG00013403
TU54953 other downstream 43352 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other downstream 43352 30081036 ~ 30083345 (-) True AMCG00013386
TU54894 other downstream 115997 30006764 ~ 30010700 (-) False G44034
TU54700 other downstream 872381 29253396 ~ 29254316 (-) True G43869
TU54456 other downstream 1658791 28467312 ~ 28467906 (-) True G43684
TU55007 other upstream 12459 30165817 ~ 30169136 (-) False AMCG00013390
TU55119 other upstream 134934 30288292 ~ 30290867 (-) False AMCG00013405
TU55155 other upstream 246529 30399887 ~ 30423025 (-) True G44243
TU55165 other upstream 302369 30455727 ~ 30459331 (-) True AMCG00013409
TU55166 other upstream 323780 30477138 ~ 30478194 (-) False AMCG00013412

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050067 False 3064 mRNA 0.44 19 NC_007114.7 26288981 ~ 26319752 (+)
grasscarp (Ctenopharyngodon idella) TU310329 True 3103 lncRNA 0.44 19 CI01000069 99720 ~ 120649 (-)
mexican tetra (Astyanax mexicanus) TU273389 False 2070 lncRNA 0.50 14 NC_035919.1 32330878 ~ 32360359 (+)