RNA id: AMCG00013394


Basic Information

Item Value
RNA id AMCG00013394
length 3492
RNA type mRNA
GC content 0.56
exon number 5
gene id AMCG00013394
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30256283 ~ 30263941 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctTGCTATAGGAAAATTACCAGCGGAATAAGAGCGCACAGTCCGACCGACTGAAGCGCTTGCCTGTTCGTACGCACAGCGGCTCTGAACCGAGCCGGGATGGAGCTGCCCGCCGCAGGGGAGCACGTCTTTGCAGTGGAGAGCATCGAGAAGAAGCGGGTCCGAAAGgGTAGAGTTGAATACCTGGTCAAGTGGAGAGGCTGGTCTCCGAAATACAACACGTGGGAGCCAGAGGAAAACATCCTGGACCCGAGGCTCCTGGTCGCTTTCCAAAACAGGGAGCGGCAGGAGCAGCTGATGGGGTACCGGAAAAGAGGGCCCAAACCAAAGCACCTGCTGGTACAGCTCCCCGCCTTCGCCCGGCGATCCAGCATCCTCTCCGGGCTGCAGGAGGCATCTCTGGACGACGACAACCGACCCAAGACTGACCAGGTCCAGAGCCACCGGGCCCAGCCCCAGCAGTACCAGCTGAACAGCAAGAAGCACCACCAGTACCTGCCCAACAGCAAGGAGAGCTCGGCCGAGCTGCCGCCCATCAGCAAGAAGAAGTACTACTACCAGCTCAACAGCAAGAAGCACCACCACTACCAGCCCGACCCCAAGATGTACGACCTGCAGTACCAGAGGGCCAAGGAGGCGAAGGGCCCGGCCGCCCCGCCGCACAGCTGGAGCCTGCCCGCCGCCCTGCAGCACAAGTGGGCCCGTGATCGGGACTCAGGCTGCCTGGGCCATGTGAAGGACCTCTCCGTGGAGCTGAAGAAGCTGCCANNNNNNNNNNCCTCGGTGGAGCCGAGTTCAAACGGCGTGGCAGGCAAAGACGGCTCGGCTGGAGGGGTGGCAGCGGCCAGGGGGGCGGTGGAGGCGGCGGTCGGCCACAACGGCATTGGCAGCAAGATGAAAATTgtcaagaacaagaacaagaacggCCGCATCGTGATCGTCATGAGCAAGTACATGGAGAGCAGCCTGCAGCCGTCCAAGGCCAAGAGCAGGGACCCAGACAGCGCCGAGAAGCAGCAGCGATCAGAGCGGCCCGAGCCAGACTGTGCCGAGAACCTCCCGGACAGGACTACAGTTTCCGACGGACGCGCCATGGACAGCATGGCCTCTAAAGACGCTAAAGATCAGCCATGCTGTGCCGCCCCCGCCTCCCCCACACAGACCAATGGGCACTCCCCGACGGCCCCGGCAGGACTGGGAGGAGGGGCTCCGGAGGGGGAGCGGGAGCCGGACGTTGCTGGAGAGAACAAAACGGAGCCTGGGAGCCCGGCAGAGGAAGAGGAGCCGGCGGATGACCAGCCCCTGCAGCTGACCACCAAGCCCAACCTGACCCCCTGGCCCTTCGAGATGGGTGTGCTGTCGCGGCTGGACCAGCGCCGGGCTGTGACGGGCGCCAACATGGCCCACTCCCGCAAGCGCAGCCTCTCCCAGCCCGACCAGGACCGGGGGCCGTGCAAGAGGTTCCTGAGCTCCAGGAGCTTCAGCGCCCCCAGCAGCGCGCCCCCCCCGGGCCAGGACAAGCCCATTGACCTGCACCTCCACCACGGCTACCCCCTCAGCACCGGGCAGCACTACCCCTTCCAGGACTCAAACCCGGAGGAGCCCATAGACTTGAGCTGCGTGAGGCCCCGGGCCGAGGCGGACGCGTGCACACAGGCCGAGCGGGAGGAGCCCCCCCGGGAGCCCGAGCCCGCGCCCCCGGAGGCCGAGGACCCCCTGCCCCACTTCCAGCCCTTCTTGGGGAACATTATCATCACTGACGTTACGGCCAACTGCCTGACCGTCACCTTCAAGGAGTACATCACTGTGTAGCCCGGACGTCACGCACACAGGGCACCACACGGACCGACCGATCTGTGAATCTGTACATTGTGagaagaataacaacaacaatatgacTAATGGTTTATCGTGAGGAGTTCAGTGTCATTGTGACTGAGACACACAGCGGACCCACAGTGGCCTTCACACCCCGGCTCTGGGCTCCTTTACTGGCTCCTCTTCTGGTTTCTGTGCCCCGGCTGTTCGGGACACGGTGCTGTATCTCAGTGTAGGTGGAGTAGGAACATTAAATACATAGTTGATGGCTGTCATCACAAACAAGCACTtacaaactgtgtgtgtgtgtgtgcttatataaacacacacacacacacacatacatatatacatagatataccTAAATCTTTTTATACTTGAAGATTTTTCCGGACTATTTCCATTAAACTCTGGCTTTATAATTTGTCGGGCGTGTTTCTGGGGGAAACGAGAGAACCAGTCAGTTCCAGATCGATGGTCTCGCTGCACACTGTGTCGAGGGGGGGGAGGGCGTACACATGAGCTGCAGCCCTGATCCTGCCGGGTCATGGCTCAGTTTTCCAGGTCTTGCCCCCCCATTAGGAGCACAGTACGAGCTCGGTAaatgtgccccccccccacccctggtcAAACAgcacaaaactaaaacatttctgAGGCATCCTGGACAGGAGTGTGATTtgcactatttttattttttacgttTTGTAGATCAGGGCAGCGGGACCATAATTAATGCTGGCTTTTCTACTGGAGCCTTTTCTTATCCACCCCTCCTGTACAGACAAACCCCTCGTTTACCAGTCCTCCCATTTAGTGCCGACGATACAACACTGTCCAAATTTAGGATTTGGTCGCACCTGTGGGTCACAGCACCTGTGAGCAGGTGAGGGCGGGGGGCTCGGGATTGTTTACAGGGACTTGGGAACCGTTCTCAGATCAGTCTGGCGTCTGCAGCCCGGGATAGCGAGGTGACGGGcggttctgttctgttctgctcTCCCTCCGTTTCCCTTCCCTTTTCTGTACCCTGGGCTGGAACTGTTGACTGCAGAGCCCTAAGGGATGGGGGGGATGTCTGTCTGCCGATTTCTGATGATCTAGTCAAATGGACgacaagttgttgttttttcaaagagGAACGCTGCTGCTAAAGTGTGGATATGAAGTTCAATTTGAGCCGTTAATGAAAACTGCTTGAATGTAAAGACTTTGAGTTTCCAATGGCCTTCAATGCTCAGTTCACTGATTTTGCAAATCAACTGCAAAAGAACAGCATCCCTGACCGGCAGGGAGTCGAGGACAGTATTTTATATCTGGTAgccatgtttgtttattattttccttcccaAACAAGTGTTTCATGTTAACTCTCAGACTAGTCAAGATGGAGCTTTCTGTGTTACTGACCTTCTCTGTAGCTGAAGGATCCTGCTTACAAGCCTGCTGTGTGGCCTCTGACCGAACGCTATCTGTTTGTATGCAAAAcaatcggggggggggggggctcctgcaaatcctgtttttttttttttgttctgtttaaatgcACTTGGTCGTTCAAAGATAAACAATGTAACTGCTTTAAAGAGGTGAAAAGGGCATTCCAGCGTCTTGTGTTTGGACCTGTTAGGGATGGCTTTCTCTAAGGTATgttttgcaataataaaaaaa

Function

GO: NA

KEGG:

id description
K11452 CBX4, PC2; E3 SUMO-protein ligase CBX4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54949 lncRNA upstream 166168 30088803 ~ 30090115 (+) False AMCG00013388
TU54935 lncRNA upstream 190791 30063408 ~ 30065492 (+) False AMCG00013382
TU54727 lncRNA upstream 809585 29434050 ~ 29446698 (+) True G43895
TU54684 lncRNA upstream 1053562 29179098 ~ 29202721 (+) True G43855
TU54681 lncRNA upstream 1078017 29177051 ~ 29178266 (+) True G43853
TU55048 lncRNA downstream 78528 30342469 ~ 30343923 (+) False AMCG00013399
TU55072 lncRNA downstream 162683 30426624 ~ 30430649 (+) True AMCG00013408
TU55089 lncRNA downstream 191731 30455672 ~ 30457671 (+) True G44182
TU55241 lncRNA downstream 470595 30734536 ~ 30734795 (+) True G44306
TU55242 lncRNA downstream 472868 30736809 ~ 30737487 (+) True G44307
AMCG00013396 mRNA upstream 27262 30221477 ~ 30229021 (+) True AMCG00013396
AMCG00013398 mRNA upstream 39259 30208073 ~ 30217024 (+) True AMCG00013398
AMCG00013397 mRNA upstream 62120 30186840 ~ 30194163 (+) True AMCG00013397
AMCG00013387 mRNA upstream 88465 30165054 ~ 30167818 (+) True AMCG00013387
AMCG00013388 mRNA upstream 166166 30083644 ~ 30090117 (+) True AMCG00013388
AMCG00013395 mRNA downstream 15250 30279191 ~ 30283556 (+) True AMCG00013395
AMCG00013400 mRNA downstream 38879 30302820 ~ 30310791 (+) True AMCG00013400
AMCG00013402 mRNA downstream 47781 30311722 ~ 30316419 (+) True AMCG00013402
AMCG00013399 mRNA downstream 75861 30339802 ~ 30344005 (+) True AMCG00013399
AMCG00013401 mRNA downstream 81380 30345321 ~ 30351835 (+) True AMCG00013401
TU55045 other upstream 34074 30218910 ~ 30222209 (+) False AMCG00013396
TU54850 other upstream 327586 29921067 ~ 29928697 (+) False AMCG00013375
TU54772 other upstream 597335 29640623 ~ 29658948 (+) False AMCG00013364
TU54615 other upstream 1151706 29104289 ~ 29104577 (+) True G43802
TU54454 other upstream 1767500 28484273 ~ 28488783 (+) True G43682
TU55098 other downstream 226886 30490827 ~ 30495656 (+) True AMCG00013416
TU55111 other downstream 299427 30563368 ~ 30568219 (+) True AMCG00013417
TU55261 other downstream 512910 30776851 ~ 30777169 (+) True G44325
TU55551 other downstream 1641027 31904968 ~ 31911801 (+) True AMCG00013468
TU55622 other downstream 2009327 32273268 ~ 32283499 (+) False AMCG00013473

Expression Profile