RNA id: AMCG00013395


Basic Information

Item Value
RNA id AMCG00013395
length 2781
RNA type mRNA
GC content 0.49
exon number 5
gene id AMCG00013395
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30279191 ~ 30283556 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGCGCTTGGCAACGCGTGGAAAAAGCGGTGACGTCAGGCGCAGGGAGTATTATGGGCTGCCGGGCTGAGCGGCGGGGCGAGCGCGAGGCGGAGGAGGAAATCAACAGCAGCGCGCGAGCGGCGACATGGAGCTGTCTGCGGTGGGGGAGCGGGTGTTCGCGGCCGAGTCCATCATCAAGCGCCGCATACGGAGGGGACGGATGGAGTACCTCGTCAAGTGGAAGGGCTGGTCTCAGAAGTACAGCACCTGGGAGCCGGAGGAGAACATCCTGGACGCCCGGCTTTTTGCAGCCTTCGAGGAGAGggagcgggagagggagcTGTTCGGGCCCAAGAAGCGAGGCCCGAAGCCCAAGACGTTCCTGCTGAAGGCCCAGGCCAAGGCCAAGGCCAAGGCGAAGACCTACGAGTTCCGCAGCGATGCCTCCAGGGGAATGCGGGTCTCTTACCCCGGCCCGGAGTCTATTATCACCCCGAGGGCCAGGGAGGGCCTACGCACCATTGTGCCCACCATCTTCCCACCCAGCACTGTTAACAGAGGGGAGAGTGTGCGGATCCCACCCCCGGAGCCTGTCCGTGAGCACAGGCCCCCTGGCCCCGAGAGACACGGGCCCGACGGCCTGGTGTCGGTACCCAAGAAGAGGGGGCCCAAACCCAAGTGCCGCTTCAAAACAAACCCGACCAGCCTCCCGGCCCCGGAGCCCTCCAAGCGGAGCAGGCTGGAGGAGCAGGTCGGATACGCCATGGCGAAGTACGGACCTTTGGAGTCCGACAAGACGGCATCCGGGCTCAGCGTGATCCAGCTGGCCCGGCGGAAGGAGGTGGAGCCCGGCTACGTCCAGAATCAGGGGCGGCCGGTTCCCACTGGCAGTTCACACGGCTACGGCCCGGGGAGCAGCGCCCACCTGTCCCGAGCGGGATTCCAGTCGTCGGCCTGCAGGACTAAGGAATGCCCGGGTGGCACGGCCTCCTCGTACCCCAGATTAAAACACCTGTCCAAAAACCACGTGTACCAGTCTGACAGCACCGACCTGTGCTCACCGCCCTCCCTGGTGGCCAAAATCCCTGTGTCCAGGATCCTGGGGGAGCCGGAGGAAGACTACTGGAGCCCATCTCTGAGTAACGTGGAGAAGGTGGTGGTGACAGACGTGACCACAAACTTTTTAACTGTGACCATTAAAGAGAGCAACACGGATCAAGGCTTCTTCAAGGATAAAAGATGActtcctttctctctgttttcattgtttctttcttcatgttttgttcttgtatttaatttatctttctttgtttttagagATCCTAATCCGGATTTTCTTCTCCGATATACACggaactggaaagaaaaaaaaaaaaaaaagacgaccATAAATTTATATTATCtttaaacattgaaattaatttttatatgaatgtacaGAAACGAAATCTCTCTCTATGTAGATTCTATATTATATGTGACCGAGAGCGtgtttacgtgtgtgtgtgtgtgtgtgacgctTTTATTTAACGAGATGACCAAAATGGGTTCAAACAAACTGTTCAGATGTGCACACACGAACAGCGTGCATTTCGATAGTTTTCCTTAAACGACTGCATGCCGTGAACATCTGGAGCCGAGTGATTCCGGTATATGTGCGCAAAACGCAGTAACCGTATAACGTAGTTGCTTTTTCTTGAATATTTCAACTTTAGCAATATGAGTCGctaatgcaaaaagcttttttttaatttcagtgctcctctttttttaatttgattacagCCTTCTCGTGACCTGGCGGCGTTACTGTGGTTTTGTTCACGGACAGACTGGCGAGATATTTCCTTTGAGCACCAAAGAGAAGCTCCGTGTATTTCATTAGTGTATAGGTCATATATAGCACAACGAAAATACAACCGCaaatggtgtatatatacacgtgtgtgtgagtgagtgtgtgtgcgagcGTGGGTGGGTGTGCTGTTGCACTTTAGTTTACATAAAAATCTATATGAagaataatttactttaattaccAGTTGAATCGCGTTTAGAAAGCTTTGAGACACTTTACGGCAGCATCTTAAttgtcaattatttttaattgagatcagttttgtttttttattcttccaaaTTACCAGTGAAAtcggtttgtttagttttgcatACTCAAAAGCTATATATCAGTATTGTAACGCTATGACAGCGAGGGCCTGTACTCGGAATAATGGGGTACCTGCAGGTGTTAATCAGTGGATTATATCACTTAGGCTTTGCCAGATTTATAAATGCCTATCTACATATCTATAGATATTTACACTATATATTTTGCTAATTAAGATTCATTGCGTTAGTATCAGGTACTCAAAATAAGGAtgatttagttaaaaaaaaattaattgttttcatttcgtTCATTAATTTAGATTGAATGGACCATCTTGCAATATTCACCGAGGTTGTTACTGTGAACAGGACTAgaaggttttattttacttagcTGTTGTTGTCTTCGTCagggcacagacacacaattgcTCGCATCTCCAAAGGATGCGGTGTGTGGTGCGGTTCTGTATCTAATGTCTGTGTCGGTCCTTGTTGAGCTGCTTGTGGACGTGCCGAGTGTACAGCCCTGGACGCCAGTGTTTGGTCCGCCGATGTAACTCAACTTCTTGCTACATTGTAGTAAACAGTTATAAAATCTCCACCTTCCTCCTGCCCGGTGTCTGTTTTTGCTGTGTCGTTGATCTTTGATGGTGAATGGTGTGTGTTGAGATGTAATTGTGC

Function

GO: NA

KEGG:

id description
K11455 CBX8, PC3; chromobox protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54949 lncRNA upstream 189076 30088803 ~ 30090115 (+) False AMCG00013388
TU54935 lncRNA upstream 213699 30063408 ~ 30065492 (+) False AMCG00013382
TU54727 lncRNA upstream 832493 29434050 ~ 29446698 (+) True G43895
TU54684 lncRNA upstream 1076470 29179098 ~ 29202721 (+) True G43855
TU54681 lncRNA upstream 1100925 29177051 ~ 29178266 (+) True G43853
TU55048 lncRNA downstream 58913 30342469 ~ 30343923 (+) False AMCG00013399
TU55072 lncRNA downstream 143068 30426624 ~ 30430649 (+) True AMCG00013408
TU55089 lncRNA downstream 172116 30455672 ~ 30457671 (+) True G44182
TU55241 lncRNA downstream 450980 30734536 ~ 30734795 (+) True G44306
TU55242 lncRNA downstream 453253 30736809 ~ 30737487 (+) True G44307
AMCG00013394 mRNA upstream 15250 30256283 ~ 30263941 (+) True AMCG00013394
AMCG00013396 mRNA upstream 50170 30221477 ~ 30229021 (+) True AMCG00013396
AMCG00013398 mRNA upstream 62167 30208073 ~ 30217024 (+) True AMCG00013398
AMCG00013397 mRNA upstream 85028 30186840 ~ 30194163 (+) True AMCG00013397
AMCG00013387 mRNA upstream 111373 30165054 ~ 30167818 (+) True AMCG00013387
AMCG00013400 mRNA downstream 19264 30302820 ~ 30310791 (+) True AMCG00013400
AMCG00013402 mRNA downstream 28166 30311722 ~ 30316419 (+) True AMCG00013402
AMCG00013399 mRNA downstream 56246 30339802 ~ 30344005 (+) True AMCG00013399
AMCG00013401 mRNA downstream 61765 30345321 ~ 30351835 (+) True AMCG00013401
AMCG00013406 mRNA downstream 82316 30365872 ~ 30390476 (+) True AMCG00013406
TU55045 other upstream 56982 30218910 ~ 30222209 (+) False AMCG00013396
TU54850 other upstream 350494 29921067 ~ 29928697 (+) False AMCG00013375
TU54772 other upstream 620243 29640623 ~ 29658948 (+) False AMCG00013364
TU54615 other upstream 1174614 29104289 ~ 29104577 (+) True G43802
TU54454 other upstream 1790408 28484273 ~ 28488783 (+) True G43682
TU55098 other downstream 207271 30490827 ~ 30495656 (+) True AMCG00013416
TU55111 other downstream 279812 30563368 ~ 30568219 (+) True AMCG00013417
TU55261 other downstream 493295 30776851 ~ 30777169 (+) True G44325
TU55551 other downstream 1621412 31904968 ~ 31911801 (+) True AMCG00013468
TU55622 other downstream 1989712 32273268 ~ 32283499 (+) False AMCG00013473

Expression Profile