RNA id: AMCG00013397


Basic Information

Item Value
RNA id AMCG00013397
length 2684
RNA type mRNA
GC content 0.64
exon number 17
gene id AMCG00013397
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30186840 ~ 30194163 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTAGTTCTGCGCTGCACTTCCGTGTTGTTACTCGCTGGAGGCCTGCAGGGACCAGGCTGGGCGCCTGGCATGTGAGCCGCAGACTCACTCGCCTTTGGACGGACAGCTGTCGCCTGTGAACTGGACAGAATTACAGCTTTATTTACTGgCCCTGTGTTGGACTGGGACAGCTCTACCCCCccactctctgtgtctcagtgcagaTGTCTTTCAGGCAACAGGGGGACCACCCGGGAGAGGTCACGGGCCGCCCCCCAGTGTCCTGCGCTCCTGGTGTCCCCGTGCTGAGGCTGTGCACACTGGGCCTGGCTGTGCTGGCATGTGCCATGTGCGTGTTCGTGGGCTCCGTGTCCGATCGCGCAGTGACCACCCGCTTCCTTGCCACCCAACCCCCAGCAGCTCGCTTGGGCAGGGAGATGGCCTCCCCAGGGAGTGGGGATAAAGTGCCGTCCCCTGCGCAGGGCGTAGAGCTGGGGTCCCCACAGGGTAGTACAGGGAGCAGGGGCAACAGCACTGACCCCGCCCCGCCGACCCCAAGCCATCAGCCCCCGCCTGCTCCCCAGTGTGATGCCCCTCCAGAGAGCCGGTTCGACTGTGCCCCCGACCAAGCGCTGGGCCGGGGAGAGTGCGAAGCCAGGGGCTGCTGCTACGTCCCCCTGCCCCGGGGCCTCCAGGGAGGGCCGCCCTGGTGCTTCTACCCACCCTCCTATCCTGGGTATCACATGGGTCCCCTCACCCCCACCCAGAGGGGCCAGGCGGCCAACCTGACCCGTGCCGCCCCCACTCACCTTCCCCAGGACATCAGCACCCTGCGCCTGGAGGTCACCGCCGAGACCCAGGGCCGCCTGCACCTCACTCTGAAGGACCCCACGTCTGCCCGGTATGAGGTGCCCCTGGACGTGCCGAGGACGGGAGGTCAGGCACAATCTCCGCTGTACGATGTCCACTTCCTGCCGGACCCCTTCGCCATCGTGGTGCAGCGCAGGTCCAACGGTCGAGtcctgcTGAACACCTCCGTGGCTCCCCTGCTGTTTGCTGACCAGTTCCTGCAGCTGTCCACCTCCCTGCCCTCCCCCCTGCTCGATGCCAACCTGTACGGGTCTCACCCTTTCTACCTGGTGCAGGAGGGGGACGGACTGGCACATGGGGTGTTCCTGCTCAACAGCAACGCCATGGTGGTGGAGCTGCAGCCCGCCCCGGCCCTGACGTGGCGTGCTCTGGGGGGGGTGTTGGACCTGTACGTGTTCCTGGGCCCCGACCCCCAGAGTGTGGTGAGGCAGTACCAGGAGgATGTCCAGTGGAATGACTTGGACTACGCTGACCTTGGGAGGGACTTCACCTTTGACCCCCAGAGGTTTGGAGACCTGCCTGCAATGGTCAGGGAGCTCCACCAGGGGGGGCTGAAGTACGTGCTGATCCTGGTGTGGCCAGGCCCCACAGCTTTCCCGGACTTCACGAACCCGGAGACCCAGCGCTGGTGGCTCGACAGCATCCAGGACTTCCACCGCAGTGTCCCCTTCGACGGGCTGTGGAttgacaTGAACGAGCCGGCCAGCTTCGTGCAGGGCTCCCTCCAGGGGTGTCCGGACAGTGACCTTGAGACCCCCCCCTACATGCCAGgtgtgGTGGGGAGGGTGCTGAGCTCGGGGACGTTGTGGTTGGGCCGGTGGGCGGCGCACTGGACCGGAGATGTTCAGAGCAGTTGGGAGCACCTGAGGCTCTCCGTGCCCGccaTGCTGTTGTTCGGGCTGTACGGGGTGCCCCTGGTGGGGGCGGACGTGTGCGGGTTCGAAGGCGATGCCTCGGAGGAGCTGTGTGTGCGCTGGACCCAGCTGGGCGCCTTCTACCccttcatgaggaatcacaatGACCGGCCCAACAAGCCCCAGGAGCCCTATGTGTTCGGTCGCGAGGCTCAGGCGGCCATGCGGAGTTCCCCTCTGACCCCAGCAGTCGGACAGTGGACCGGCAGTTCCTGTGGGGGGGAGCCGGCCCTGACCACCTCTCGGGCGCGCAGCAACCCCTTCCACCTGACTGTGGGGCTGAGCGAGGGCGGCTGGGCGCGGGGCGAGCTGTTCTGGGACGACGGGGACAGTCTGGACAGCCTGGAGACTGGGGACTACTCGCACATCTTGTTTCTGGCTGGAGAgGCCCAGCTGGTGAGCGAGCTGCTGCGTGTCACTGATGCTCTCGACGGGCTGTTGCTGGGGGGGGTGCGGGTGTTCGGGGTGTCCTCTCCCCCCCGCCAGGTCTGGGCCAACGGGCAGCTGGTGAGAGACTTCTCCTACCGCACAGACACCCGGATGCTGACCGTGCCCGGCCTGGCTCTGCCTATGTGGGAGGTGTTCACCGTGCGCTGGGCTCTGTGATGAACAGCTGGGCAGTCGGAGGAGATGCTGTCTGTGGGCGGTTTATAGAGACCACCCTGCCCAGTGTCTCCCGGTCACCCAGTGACTGTCCGTCTCCCACAGTGTGTGTCCGTCTCCCAGTCTCTCAGTCACCCCCTGTGTCCTCGGTCCTCCTCTCCCAGCGCCCCACTGGGGAGGACTGTCTTTCGGGGCTGCTGTgatgtttgtaatatttttattcagattGCACTATTtgctgtgtgtgcttttttgtttatgtaaacTGAAAGATGTCTATTTTGGttactgcaataaaaaataatacaatgaggAAA

Function

GO:

id name namespace
GO:0044093 positive regulation of molecular function biological_process
GO:0043085 positive regulation of catalytic activity biological_process

KEGG:

id description
ko04625 C-type lectin receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54949 lncRNA upstream 96725 30088803 ~ 30090115 (+) False AMCG00013388
TU54935 lncRNA upstream 121348 30063408 ~ 30065492 (+) False AMCG00013382
TU54727 lncRNA upstream 740142 29434050 ~ 29446698 (+) True G43895
TU54684 lncRNA upstream 984119 29179098 ~ 29202721 (+) True G43855
TU54681 lncRNA upstream 1008574 29177051 ~ 29178266 (+) True G43853
TU55048 lncRNA downstream 148306 30342469 ~ 30343923 (+) False AMCG00013399
TU55072 lncRNA downstream 232461 30426624 ~ 30430649 (+) True AMCG00013408
TU55089 lncRNA downstream 261509 30455672 ~ 30457671 (+) True G44182
TU55241 lncRNA downstream 540373 30734536 ~ 30734795 (+) True G44306
TU55242 lncRNA downstream 542646 30736809 ~ 30737487 (+) True G44307
AMCG00013387 mRNA upstream 19022 30165054 ~ 30167818 (+) True AMCG00013387
AMCG00013388 mRNA upstream 96723 30083644 ~ 30090117 (+) True AMCG00013388
AMCG00013382 mRNA upstream 112092 30063380 ~ 30074748 (+) True AMCG00013382
AMCG00013377 mRNA upstream 125287 30046238 ~ 30061553 (+) True AMCG00013377
AMCG00013380 mRNA upstream 141340 30033411 ~ 30045500 (+) True AMCG00013380
AMCG00013398 mRNA downstream 13910 30208073 ~ 30217024 (+) True AMCG00013398
AMCG00013396 mRNA downstream 27314 30221477 ~ 30229021 (+) True AMCG00013396
AMCG00013394 mRNA downstream 62120 30256283 ~ 30263941 (+) True AMCG00013394
AMCG00013395 mRNA downstream 85028 30279191 ~ 30283556 (+) True AMCG00013395
AMCG00013400 mRNA downstream 108657 30302820 ~ 30310791 (+) True AMCG00013400
TU54850 other upstream 258143 29921067 ~ 29928697 (+) False AMCG00013375
TU54772 other upstream 527892 29640623 ~ 29658948 (+) False AMCG00013364
TU54615 other upstream 1082263 29104289 ~ 29104577 (+) True G43802
TU54454 other upstream 1698057 28484273 ~ 28488783 (+) True G43682
TU54319 other upstream 2250902 27934074 ~ 27935938 (+) False AMCG00013310
TU55045 other downstream 24747 30218910 ~ 30222209 (+) False AMCG00013396
TU55098 other downstream 296664 30490827 ~ 30495656 (+) True AMCG00013416
TU55111 other downstream 369205 30563368 ~ 30568219 (+) True AMCG00013417
TU55261 other downstream 582688 30776851 ~ 30777169 (+) True G44325
TU55551 other downstream 1710805 31904968 ~ 31911801 (+) True AMCG00013468

Expression Profile