RNA id: AMCG00013398


Basic Information

Item Value
RNA id AMCG00013398
length 2082
RNA type mRNA
GC content 0.64
exon number 15
gene id AMCG00013398
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30208073 ~ 30217024 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGGGCAGCGTGAGCAAGAGTAcagagctgcaggagctggacGAGGATGAACTGTGGGGCCTCATCGAGGACCACCGACACCCCCTGTCCTTGGGGGTGCAGCCCTGCCTGCTCATCCCCTTCCTGCGCCAGGCCAGGATGCTGGACGAGCTGGACGAGGACGAGATCCTGCACAGCCTGCAGCTCACCCACCGCTGCATGAAGAccagccGCATGCTGGACCTTCTGCGGACCCGAGGCCGAGACGGAGCCATGGCCTTTCTGGACAGCCTGATGATCCACTACCCCAAACTGTACAGCCAGGTGACCGGCCTGACGCCCAGCTCTCACAACACCGGCTTCAGCGGCCTGATGAAGACCTCCGAGCTGACAGAGTACCTGGTGCGTGCCATCACCGGCATGCAGGAGCAGATGTGCGCGGCGCGGGCGGAGGCAGGGGCACTGGAGGCACGCTGCTCGAAGCTGGAGGGGGAGCTGGCACAGGCGCAGCGCCGGAGCGAGGCACAGCGGGGCCTGGAGGCGGAGCATGCCCGACTGCGCCGGGAGGTGCAGAACTCTGTGGACACCCGCCAGCTCCGCGAAGAGATCATCACCCTGCGCCGCAAACTGCTGCAGGCTGAGACATTCAGTCCGGCCCGGGAGGATATCCTGGAGCGAGACCTGGAAGAGGCCCTGGATAGCCGGGGAGAGCTGGTGGATCAGATCAGCAGCCTTCAGGAGGAGTGTGAGAGACTGGTTAGCGAGAGAGAAGAGCTCCTGGAGGAGAAGGAGTCTCTGGCCCTGCAGGTGGAGAAACTGTCTCTGGACTGTGAAATGTACCAGCAGAAGACCACGATCGCCAAGAGCCTGTCAGAGAAGGATGCCCTCCGGCTGCAGCTGGTGGAACTGCAGGACAAGTTGTTCAGTCTGCGCACACATGTGGCCAAGAACAGCATGGAccgagaggaggagagggactGGACTGGAGCTGAGgaggGGGCTGAGACGTGCAACAGTTTCCGGTCTAATTGCGCTGAGCCGCCCAGTATGGTGTCGCTGCGCCGCAGAGAGGAGGACCTCCAGAGAAGCACCGAGCGCTCAGACTCCAAGCTGGGGATCTGGGACCCCCTGCCATCACCGCTGGACGGGGACGGGGACTTCGTCTTTGTGGCCCGGCGCAATGGCAGCCGTGTGATGACCATCTCCTTCCAGGGGGAGGCGCTGCTGAGCCAGCTACAGGTGCTGGGGGGGAACAACACAGGCGTGTTCGTGCACTGTGTCACCGAGGGGTCGGCTGCCCAGAGCGTGGGTATCAGCCCAGGGGCACAGATCCTGGAGGTGCAGTGCGAGAGGGAGCACCAGTCTTTCCGAGCCGTGCTGGAGGAGGCCACCCTGGAGGAGGCGCTGTGGGCCCTGCAGCAGGTCCGTGGCTTCTGCTGCCTCTCCCTGCGGTCCAATCAGGATGGCTATGAGAAGCTGCTGAGCGGGCTGCGCAGTGGGGAGTTGACCTCTGGCGACTCCTTCTACGTGCGTGTGAACGTGTCGCTCCCGGGGGACGGTGGCAGGGGGGGGCGGCTGGCCGTGCGCTGCGATGACGTTGTACACGTGATGGACACGCGCTACGGCTCCGACGGGACCTGGCGTGCCTGCCGCACCCACCACTACCAGCTCAAGGACCTGGAGTCGGGCACACTGCCCAACTACTACAGtgctgtgtccGGGAACATCACCCTGATGCCCTACACCCTGGTGAACCCAcaccgcccccccgccccccggccAGTCCTCCTGCTGCCCACAGTCTTCGGCCGACTGATGAACAACCGGCTGGCGGAGCTGCAGGGCTTCCAGAAGTGTGTACCAGAGGTGTTGAGTGACAGTGAATATGCACTGCGACTACAGAGGGGGGAGGTACTAGAGGACAAAGAGATCTACCCCATCGTCATTTTCACCGTGCTGTCTGACAGGAGCATCCGCAAGCTCCGCACCGTGGTGCCTGAGACCTGGGGGGACAGCGCTGCCCTACTGGCCCAGCTGCGCAGCACCGTGCTGGAGGAGCAAAGCAAGATCGTGTGGGTGGAGCAGGACCTGCTGCGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU54949 lncRNA upstream 117958 30088803 ~ 30090115 (+) False AMCG00013388
TU54935 lncRNA upstream 142581 30063408 ~ 30065492 (+) False AMCG00013382
TU54727 lncRNA upstream 761375 29434050 ~ 29446698 (+) True G43895
TU54684 lncRNA upstream 1005352 29179098 ~ 29202721 (+) True G43855
TU54681 lncRNA upstream 1029807 29177051 ~ 29178266 (+) True G43853
TU55048 lncRNA downstream 125445 30342469 ~ 30343923 (+) False AMCG00013399
TU55072 lncRNA downstream 209600 30426624 ~ 30430649 (+) True AMCG00013408
TU55089 lncRNA downstream 238648 30455672 ~ 30457671 (+) True G44182
TU55241 lncRNA downstream 517512 30734536 ~ 30734795 (+) True G44306
TU55242 lncRNA downstream 519785 30736809 ~ 30737487 (+) True G44307
AMCG00013397 mRNA upstream 13910 30186840 ~ 30194163 (+) True AMCG00013397
AMCG00013387 mRNA upstream 40255 30165054 ~ 30167818 (+) True AMCG00013387
AMCG00013388 mRNA upstream 117956 30083644 ~ 30090117 (+) True AMCG00013388
AMCG00013382 mRNA upstream 133325 30063380 ~ 30074748 (+) True AMCG00013382
AMCG00013377 mRNA upstream 146520 30046238 ~ 30061553 (+) True AMCG00013377
AMCG00013396 mRNA downstream 4453 30221477 ~ 30229021 (+) True AMCG00013396
AMCG00013394 mRNA downstream 39259 30256283 ~ 30263941 (+) True AMCG00013394
AMCG00013395 mRNA downstream 62167 30279191 ~ 30283556 (+) True AMCG00013395
AMCG00013400 mRNA downstream 85796 30302820 ~ 30310791 (+) True AMCG00013400
AMCG00013402 mRNA downstream 94698 30311722 ~ 30316419 (+) True AMCG00013402
TU54850 other upstream 279376 29921067 ~ 29928697 (+) False AMCG00013375
TU54772 other upstream 549125 29640623 ~ 29658948 (+) False AMCG00013364
TU54615 other upstream 1103496 29104289 ~ 29104577 (+) True G43802
TU54454 other upstream 1719290 28484273 ~ 28488783 (+) True G43682
TU54319 other upstream 2272135 27934074 ~ 27935938 (+) False AMCG00013310
TU55045 other downstream 1886 30218910 ~ 30222209 (+) False AMCG00013396
TU55098 other downstream 273803 30490827 ~ 30495656 (+) True AMCG00013416
TU55111 other downstream 346344 30563368 ~ 30568219 (+) True AMCG00013417
TU55261 other downstream 559827 30776851 ~ 30777169 (+) True G44325
TU55551 other downstream 1687944 31904968 ~ 31911801 (+) True AMCG00013468

Expression Profile