RNA id: AMCG00013402



Basic Information


Item Value
RNA id AMCG00013402
length 873
RNA type mRNA
GC content 0.69
exon number 4
gene id AMCG00013402
representative True

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30311722 ~ 30316419 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGACCTCAGAGTGAGCGGCCCGCTTGTGCTGCTCCTGCCCCTGCTGGGGCTGTGCGCCGCCGACCTGTGCAACTGGAGAGGCAGCGGTCTGGCGCGGGAGCCTCACTCCCGCACGGTGCAGCAGGTTCGTCTGCGCTGCACGGAGGGGCAGGTGGAGTGGTTCTACCCCAGCCAGGCCCTGCGGGTGCTGCTGCAGCCCAACCTGGCGTCGGCCCGGCCCGCCACCGTGTGCATCAAGCCCCTGCGCAGCTTCCGCGGTGCCAGTGTGTTCATCGAGCGTGCCGGggagctggagctgctgctggccGAGGGCGGGCTGCCGGAGCAGGTGTACTGTTTCCGCACTGCCAGCCCCCAGCAGCCTGCCGCCGTCTTCCTGCAGGCGAGTCCCCACAGTGACATCAGCCGGCGCACCGTGGGCTTCCGCTACGAGCTGCTGGGCCACCATGGCGCCCAGCCCGACCTCCGGGCCACCGTAGTGCAGGccGTGTGCCGCCCGTGCAATGACACAGAGCTGCTCCTGGCCGTTTGCAGCTCGGACTTCGTGGTGAGGGGCTCAATCCAGGCGGTGTCTCATGACGAGGAGCGGCAGACATCGCGCCTGGAGGTGGGCTCCGGCCACGTGTACCGGCAGCGCAGTGGTGTGTTCGAGCGGGATGGTGCAGGGGGGTCAGGGGGGGCCTGGAAGGGTTACATCCATACCCTGCTGCAGTGCGGCGTGAGGCAGGGGGACGGGGAGTTCCTCTTCATGGGGGCGGAGCACTTCGGGGAGGCGTGGCTGGGTTGTGCGCCACGGTACAAAGACTTCCTGTCTGTGTATGGTGTCGCCCGGGCGGCCCGTGAGAACCCCTGCGAGTTCCCTCTAGattga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU54949 lncRNA upstream 221607 30088803 ~ 30090115 (+) False AMCG00013388
TU54935 lncRNA upstream 246230 30063408 ~ 30065492 (+) False AMCG00013382
TU54727 lncRNA upstream 865024 29434050 ~ 29446698 (+) True G43895
TU54684 lncRNA upstream 1109001 29179098 ~ 29202721 (+) True G43855
TU54681 lncRNA upstream 1133456 29177051 ~ 29178266 (+) True G43853
TU55048 lncRNA downstream 26050 30342469 ~ 30343923 (+) False AMCG00013399
TU55072 lncRNA downstream 110205 30426624 ~ 30430649 (+) True AMCG00013408
TU55089 lncRNA downstream 139253 30455672 ~ 30457671 (+) True G44182
TU55241 lncRNA downstream 418117 30734536 ~ 30734795 (+) True G44306
TU55242 lncRNA downstream 420390 30736809 ~ 30737487 (+) True G44307
AMCG00013400 mRNA upstream 931 30302820 ~ 30310791 (+) True AMCG00013400
AMCG00013395 mRNA upstream 28166 30279191 ~ 30283556 (+) True AMCG00013395
AMCG00013394 mRNA upstream 47781 30256283 ~ 30263941 (+) True AMCG00013394
AMCG00013396 mRNA upstream 82701 30221477 ~ 30229021 (+) True AMCG00013396
AMCG00013398 mRNA upstream 94698 30208073 ~ 30217024 (+) True AMCG00013398
AMCG00013399 mRNA downstream 23383 30339802 ~ 30344005 (+) True AMCG00013399
AMCG00013401 mRNA downstream 28902 30345321 ~ 30351835 (+) True AMCG00013401
AMCG00013406 mRNA downstream 49453 30365872 ~ 30390476 (+) True AMCG00013406
AMCG00013408 mRNA downstream 108588 30425007 ~ 30429147 (+) False AMCG00013408
AMCG00013407 mRNA downstream 123255 30439674 ~ 30452954 (+) True AMCG00013407
TU55045 other upstream 89513 30218910 ~ 30222209 (+) False AMCG00013396
TU54850 other upstream 383025 29921067 ~ 29928697 (+) False AMCG00013375
TU54772 other upstream 652774 29640623 ~ 29658948 (+) False AMCG00013364
TU54615 other upstream 1207145 29104289 ~ 29104577 (+) True G43802
TU54454 other upstream 1822939 28484273 ~ 28488783 (+) True G43682
TU55098 other downstream 174408 30490827 ~ 30495656 (+) True AMCG00013416
TU55111 other downstream 246949 30563368 ~ 30568219 (+) True AMCG00013417
TU55261 other downstream 460432 30776851 ~ 30777169 (+) True G44325
TU55551 other downstream 1588549 31904968 ~ 31911801 (+) True AMCG00013468
TU55622 other downstream 1956849 32273268 ~ 32283499 (+) False AMCG00013473

Expression Profile