RNA id: AMCG00013403


Basic Information

Item Value
RNA id AMCG00013403
length 1665
RNA type mRNA
GC content 0.59
exon number 12
gene id AMCG00013403
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30333448 ~ 30340461 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCCCAGTGACGAGTTAACCCGTTCACAAGCATGAGAGATTGACGTACGGGCCTGGTTGCCCAGCGCAAACCACATTCAAATTCCAACATGGGGTCCAGAATGTGGTTTTGGCACGGAAGGACGGGGCGTGCGGCAGCAGGGGGAAGTTTAAACTGCGGTTCTGGCACTAACACCAGGACGGTTTTATAGTTATGGCACATATTGTTCGGCAATCGGACAGAGAGATCAGCTGACTTGCACTGTCATATGACTGTGGCTGACTGTGTGCCCAGATTGCCACTGCGATGATGGAGGGACACAAGATCACCGGgcttctgctgctgctcctggcCATTGATGCAGgtGGTGCGGTGCCAAGAGAAGGGAAGGAGACTTGGGGCTATGTGGATGTACGGGATGGCGCTCACATGTTCTGGTGGCTGTACTACACTACCAACCCCACCCACAACTACACTCAAGTGCCCCTGGTTATGTGGCTGCAGGGCGGCCCGGGCGGCTCCGGCTGCGGGTTTGGGAACTTCGAGGAGATCGGGCCGCTGGACCGGGACCTGAAGCCCAGAAACACGACCTGGACCTTCTTCAAGTCTCATATGGAGTTCCAGGCGATCGGCGAGGGCTCCATCAGATGCAAGTTCGCGGGCGTGGCTCTGGGCGACTCCTGGATCTCCCCGCTGGATTCTGTCATGTCCTGGGGGCCATACCTGTACAGCACGTCTCTGCTGGACGACCGTGGCCTGGCGGAGGTGGACGGCGCGGCGCGGGCGGTGCAGCAGGCCGTGCAGCACGGGGAGTTTGAGAAGGCCACGGAGCTGTGGTCCAACACAGAGAACGTGGTGGAGCAGAACACCAATTTTGTGAACTTCTACAACATCCTGACCCAGGACCCTGACAACACGGCCAAGATGGTGGCCGGAGATGGACACCTTGCCTCCCTGCTGCGCCGACATGTGCGCCCCCTGCACAAGCAGTCACTCAGCCAGCTAATGAACGGCCCCATCAGGGACAAGCTGAAGGTCATCCCCCACGACGTCACCTGGGGAGGCCAGTCTGCAGAGGTGTTCTCCAGCATGGCTGGGGACTTCATGAAGCCAGTGGTGGACACTGTGGACCAGCTGCTGGCGGCCGGAGTCAACGTGACGGTCTACAACGGACAGCTGGACCTGATCGTGGACACGATGGGTCAGGAGGCCTGGGTCAAGAGGCTGAAGTGGGCGGGACTTCCTGATTTTAACAAGCTGAGATGGACAGCCCTGGACGACCCCACCTCCCCGGGCCAGACCGGTGCATTCTACAAGGTCTACCAGAACTTCGCCTTCTACTGGATCCTCAAGGCTGGCCACATGATCCCCTCGGACCAGGGAGAGATGGCTCTGGAGATGCTGAGGATGGTGACCAGGCAGGAGTGACCGGGTCAGAGGTCAGCTGGGATGACCCTGCAGCCAGAAGACAATCACCCCCACAGCCTCCCCTTCCCCAATCCAATCAGCACCGCGCACACCTCCGCCCCACACCGCCGCCTGCAGACCGGCCCGCAGGGATCACGGGCGAACTGTGTCTGGGTGGTCAGCTAGTAATGTCTGCTGTTTCACGTGTGAACCAATCAAAGCCTGTTTTGAGaacaagtttattttgataatctgtgatttgtgttaaaaatactgaca

Function

GO:

id name namespace
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K09646 SCPEP1; serine carboxypeptidase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55141 lncRNA downstream 22682 30307026 ~ 30310766 (-) True G44230
TU55012 lncRNA downstream 158142 30173492 ~ 30175306 (-) False AMCG00013390
TU54958 lncRNA downstream 243301 30088803 ~ 30090147 (-) True G44086
TU54905 lncRNA downstream 271814 30040205 ~ 30061634 (-) True AMCG00013384
TU54897 lncRNA downstream 322748 29950840 ~ 30010700 (-) False G44034
TU55124 lncRNA upstream 44225 30384686 ~ 30455606 (-) True G44213
TU55187 lncRNA upstream 193510 30533971 ~ 30539317 (-) True G44261
TU55177 lncRNA upstream 199852 30540313 ~ 30542858 (-) True G44256
TU55180 lncRNA upstream 200207 30540668 ~ 30562691 (-) False G44256
TU55192 lncRNA upstream 210928 30551389 ~ 30552050 (-) True G44264
AMCG00013404 mRNA downstream 748 30322265 ~ 30332700 (-) True AMCG00013404
AMCG00013405 mRNA downstream 42960 30286642 ~ 30290488 (-) True AMCG00013405
AMCG00013390 mRNA downstream 149024 30167981 ~ 30184424 (-) True AMCG00013390
AMCG00013392 mRNA downstream 168970 30155262 ~ 30164478 (-) True AMCG00013392
AMCG00013393 mRNA downstream 180090 30126697 ~ 30153358 (-) True AMCG00013393
AMCG00013410 mRNA upstream 90203 30430664 ~ 30436741 (-) True AMCG00013410
AMCG00013409 mRNA upstream 116942 30457403 ~ 30464091 (-) False AMCG00013409
AMCG00013412 mRNA upstream 128169 30468630 ~ 30482326 (-) True AMCG00013412
AMCG00013411 mRNA upstream 142844 30483305 ~ 30486316 (-) False AMCG00013411
AMCG00013419 mRNA upstream 167490 30507951 ~ 30521671 (-) True AMCG00013419
TU55119 other downstream 42581 30288292 ~ 30290867 (-) False AMCG00013405
TU55007 other downstream 164312 30165817 ~ 30169136 (-) False AMCG00013390
TU54953 other downstream 250103 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other downstream 250103 30081036 ~ 30083345 (-) True AMCG00013386
TU54894 other downstream 322748 30006764 ~ 30010700 (-) False G44034
TU55155 other upstream 59426 30399887 ~ 30423025 (-) True G44243
TU55165 other upstream 115266 30455727 ~ 30459331 (-) True AMCG00013409
TU55166 other upstream 136677 30477138 ~ 30478194 (-) False AMCG00013412
TU55168 other upstream 143058 30483519 ~ 30486331 (-) False AMCG00013411
TU55173 other upstream 143058 30483519 ~ 30486331 (-) True AMCG00013411

Expression Profile