RNA id: AMCG00013404


Basic Information

Item Value
RNA id AMCG00013404
length 2372
RNA type mRNA
GC content 0.62
exon number 11
gene id AMCG00013404
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30322265 ~ 30332700 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCGCAGTAGCAGCGCGCCCGCCCCCTCTCTGCGCAGAGCTGTCAGGCTGACTGCCCTGTGGACACGCAGTCCTGTCCCGTCTGCCCGCGGACACGCACCCACGTCGGGCTCTCTACGGGGAGGTCTCGTACGCACATCCGTAGGTACCTGGAAAGACAAGTCCTCCGTGAAAACAGCTTCCCTGTGCGACTGGCTGTGGCAGTTTCCTGGTGCCTACTATCGGTTAGTATCCCTCCTGTGAGCAACATGGCGGAGCAACCGTCGTCGCTGCTGGGCCTGGAGGAAGAGCTGACATGCAGCATCTGCCTGGGGCTGTTCGACAGCCCGGTGACCACCCCCTGCGGCCACAACTTCTGCACCAACTGCCTGGAGATGACCTGGCAGGAGTACCAGGAGGTGGCGCTGGGCTTCAACTGCCCTCAGTGCCGCACGCACTTCTACACCAAACCCATGCTGCAGAAGAACACGGTGCTCAGCACGGTGGTGAAGACCTTCCTTGCATCCCAGAAGAACAGCACCTCGGCGCCAGTATCAGAGTGCATCCTGCCGAAGGAGGTCGAACCGGCGGAGGAGCCCTCAGTGGAGGAGTCCATCCTGTGTGACACCTGCATGGTGAGCCAGGCCTCCAAGACCTGCCTGACCTGCATGGCGTCCTACTGTGAGACGCATGTCCGGCCGCACGTGGAGAACCCTGTGTTCACAGCGCACCAGCTGAGCGAGCCACTGTCGGACCTGCAGCAGCGCATCTGCCCCGAGCACCACAAGCTCATGGAGTTCTACTGCCAGCAGCACGGGCGCTGCATCTGCAGCATGTGCCTCCAGCAGACCCACAAGCCGTGCCGCTTCTCCACGCCGCAGGAGGTGCGCACCGAGCAGGAGTCGAAACTGAAGAAGAACGTGGTGCTGCTGGACGAGAAGATCGAGCTCACACGCAGCGTCATCTCGCAGGTGAAGGCGCAGCAGGACGCAGTGAAACTGCATGGCAGGATGGGCCGCCGCAGGGTGGTCCAGGAGTCCCAGCCCCTCAGTAAGCTCACACGCAAGGAACACAAGCTCACAGTCAAGTCTCGGCTCGCAGGACGTGGTCGGTGGAGAGACCAGCATTCACcgctgtctctgtctgtctgcggGGCTTGTCTTTGTCAGGAGTTGGCAGCCAGCAGGAAGCGGGCCATGCAGGAGAAGTACCGACTGGCGAGGGAGCTGCTGGCCCAGGACGAGCAGGATGCGCTGAAGGTGGTGGACCTGGAGCAGGAGAGCGCCCAGACCCGCGTCAAGACCCTGCTGCTGCGGCTGGGCCGGAACCTGGAGGAGATGAGCAGCGCCCGGCAGCGCATCGACAGCCTGCTGGCCCACAGCCACAGCGTCAGCTTCCTGCAGGGGGCCTCTCCCGCGATTCACACTGCGTTTGTATTTAATCAGCAGGTCCACCGCCACCATCGCAGCCACATCCGCCTTCGCATCTGCATCCTGAGCCAGGTGAGGGTTCGAGAAGTGCTGTCAGATTTGGGTCCTGgcatccagagacctggTCCCCGCTGCCATCCTAAACCCTGGAAAGATACCAGGGAAGAAGAAGAACCCTGGATACAAAACTCCCAAAGCCTCAAGGCTAGGTTCAGCGtcTGTGGCTCTCCAAACCCGGTGGCCAAGAGAAGTGACCTCCTGCAATGCGCCACGGTTCTGACCCTGGACCCCAAGACTGCCCACAAGCGCATCTTGCTCTCGGAAGACTTGACCAAGGCCTCTGTGTCGGAGGAGCAGACCTCTTACCCGGAGAACCCAGCCCGGTTCTCGGTGTGCTCCCAGGTCCTGTGCGGCAAGGGCTTCTCCCGTGGGCGGCACTACTGGGAGGTCAAGATGAGCAGCAACAACTTCTGTGCGGTGGGCCTGGCCTACAACAGCATCGAGCGCAAGGGCCCGACCAGCAAGCTGGGCCGCAACAAGCAGTCATGGTGCGTGGAGTGGTTCAACGTCAAGCTGTCTGCCTGGCATGACAACCAGGAGACGGTGCTGTTCAACCCCAGCCCCAGCCGCGTGGGCATCCTGCTGGATTGCGACGGCGGCTCTGTCACCTTCTACAACCTCTCCCGTGAACCTGCGGGCCACCACAGACACCCAGTGGACATGGCTGACTGGGACAGACACGCCCTCACACACCAGAGAGACTGGGGCATTAAAGTGAAAAGGCAGGGAGACGGGAACGAGGTCCACCGAAGCCCTCTTCGCAGCTGGAGTCTGGAGAGATATTACGTTACTCCTGGCACTCCGGCTGCCTGGCCATCCTGTGTGCCGCTCCTGGCCTCGCTGCCGAATGGAGGGCTGTCACAGCAGAGCGGCTCCACGGGCACGCTGGGCCTCCGCACTTAA

Function

GO: NA

KEGG:

id description
K10652 TRIM25, EFP; tripartite motif-containing protein 25

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55141 lncRNA downstream 11499 30307026 ~ 30310766 (-) True G44230
TU55012 lncRNA downstream 146959 30173492 ~ 30175306 (-) False AMCG00013390
TU54958 lncRNA downstream 232118 30088803 ~ 30090147 (-) True G44086
TU54905 lncRNA downstream 260631 30040205 ~ 30061634 (-) True AMCG00013384
TU54897 lncRNA downstream 311565 29950840 ~ 30010700 (-) False G44034
TU55124 lncRNA upstream 51986 30384686 ~ 30455606 (-) True G44213
TU55187 lncRNA upstream 201271 30533971 ~ 30539317 (-) True G44261
TU55177 lncRNA upstream 207613 30540313 ~ 30542858 (-) True G44256
TU55180 lncRNA upstream 207968 30540668 ~ 30562691 (-) False G44256
TU55192 lncRNA upstream 218689 30551389 ~ 30552050 (-) True G44264
AMCG00013405 mRNA downstream 31777 30286642 ~ 30290488 (-) True AMCG00013405
AMCG00013390 mRNA downstream 137841 30167981 ~ 30184424 (-) True AMCG00013390
AMCG00013392 mRNA downstream 157787 30155262 ~ 30164478 (-) True AMCG00013392
AMCG00013393 mRNA downstream 168907 30126697 ~ 30153358 (-) True AMCG00013393
AMCG00013391 mRNA downstream 195764 30117800 ~ 30126501 (-) True AMCG00013391
AMCG00013403 mRNA upstream 748 30333448 ~ 30340461 (-) True AMCG00013403
AMCG00013410 mRNA upstream 97964 30430664 ~ 30436741 (-) True AMCG00013410
AMCG00013409 mRNA upstream 124703 30457403 ~ 30464091 (-) False AMCG00013409
AMCG00013412 mRNA upstream 135930 30468630 ~ 30482326 (-) True AMCG00013412
AMCG00013411 mRNA upstream 150605 30483305 ~ 30486316 (-) False AMCG00013411
TU55119 other downstream 31398 30288292 ~ 30290867 (-) False AMCG00013405
TU55007 other downstream 153129 30165817 ~ 30169136 (-) False AMCG00013390
TU54953 other downstream 238920 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other downstream 238920 30081036 ~ 30083345 (-) True AMCG00013386
TU54894 other downstream 311565 30006764 ~ 30010700 (-) False G44034
TU55155 other upstream 67187 30399887 ~ 30423025 (-) True G44243
TU55165 other upstream 123027 30455727 ~ 30459331 (-) True AMCG00013409
TU55166 other upstream 144438 30477138 ~ 30478194 (-) False AMCG00013412
TU55168 other upstream 150819 30483519 ~ 30486331 (-) False AMCG00013411
TU55173 other upstream 150819 30483519 ~ 30486331 (-) True AMCG00013411

Expression Profile