RNA id: AMCG00013405


Basic Information

Item Value
RNA id AMCG00013405
length 874
RNA type mRNA
GC content 0.62
exon number 6
gene id AMCG00013405
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30286642 ~ 30290867 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCAGAACCGGAGATGAAGAAGTTCGTGGTGCTCGGTTTGTGCCTGGTCTTACTGACCGTCCTCACAGaTGCCTCTCCAATTGTGAAGGAGAAGTTCGCAAAACAGCTCCTCAGGACCAAGAGGCAGGAGAGACCGAGGAAGGCGGGCTTTCCAGATGAGCCGTTGAGGGAGCACAATCTGTACATGCAGAGACTGGACCAGATCGCCCAGGAGACCAACATGGAGCACTGGCTCAACCCCCACTGCTTCCCCCGCTGCAACCGAAACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccccccccccccccccgcactTGCAGACACACAGCGCTCGGAGGGGCTTCCTGCAGACCCCCCactcaccaccaccacctcctcgCACCCCCTGATCGCAACCGGGCCGAGGCGCGTTGTATCCCAGCACCCCCTCACCTGGAGGACGAGCTGCAGATACACGGGGGGATGGGGTCAGGAGAGCCGGACCGGGCCCAGCCGACACCGGAGGAAAGCCCGGGGTTCCGCTCATGTCCAGCTCCGCATCGGTCTcctgctgcagctcctcctgCCTCTCTATGGACACGATTGCTACTGCAGCCCTTATTCCGTCGGTCCAGTGGGGGCCTCCGAGGCAGACGACCCGGGCTCCCAGCTCTCAGGGCGGCTGGACACACAGCTGGGGCGACGCTGCGGGAAGACACAGCTGGACACGCAACATGGTGCTCACCCGAGACGCGTCTGTGTCCATCGCAAGAGTGTCCACCTGACGAGCGGCACCCCAACCAGGGACGGGCGACCAGAGAGGAGGTGCTGCCCGCCCGCTCCCCCCCGTGGCCTGTACGGGCACTGCATCCGGTGC

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55012 lncRNA downstream 111336 30173492 ~ 30175306 (-) False AMCG00013390
TU54958 lncRNA downstream 196495 30088803 ~ 30090147 (-) True G44086
TU54905 lncRNA downstream 225008 30040205 ~ 30061634 (-) True AMCG00013384
TU54896 lncRNA downstream 258412 29926383 ~ 30028230 (-) True G44034
TU55141 lncRNA upstream 16538 30307026 ~ 30310766 (-) True G44230
TU55124 lncRNA upstream 94198 30384686 ~ 30455606 (-) True G44213
TU55187 lncRNA upstream 243483 30533971 ~ 30539317 (-) True G44261
TU55177 lncRNA upstream 249825 30540313 ~ 30542858 (-) True G44256
TU55180 lncRNA upstream 250180 30540668 ~ 30562691 (-) False G44256
AMCG00013390 mRNA downstream 102218 30167981 ~ 30184424 (-) True AMCG00013390
AMCG00013392 mRNA downstream 122164 30155262 ~ 30164478 (-) True AMCG00013392
AMCG00013393 mRNA downstream 133284 30126697 ~ 30153358 (-) True AMCG00013393
AMCG00013391 mRNA downstream 160141 30117800 ~ 30126501 (-) True AMCG00013391
AMCG00013389 mRNA downstream 185938 30091862 ~ 30100704 (-) True AMCG00013389
AMCG00013404 mRNA upstream 31777 30322265 ~ 30332700 (-) True AMCG00013404
AMCG00013403 mRNA upstream 42960 30333448 ~ 30340461 (-) True AMCG00013403
AMCG00013410 mRNA upstream 140176 30430664 ~ 30436741 (-) True AMCG00013410
AMCG00013409 mRNA upstream 166915 30457403 ~ 30464091 (-) False AMCG00013409
AMCG00013412 mRNA upstream 178142 30468630 ~ 30482326 (-) True AMCG00013412
TU55007 other downstream 117506 30165817 ~ 30169136 (-) False AMCG00013390
TU54953 other downstream 203297 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other downstream 203297 30081036 ~ 30083345 (-) True AMCG00013386
TU54894 other downstream 275942 30006764 ~ 30010700 (-) False G44034
TU54700 other downstream 1032326 29253396 ~ 29254316 (-) True G43869
TU55155 other upstream 109399 30399887 ~ 30423025 (-) True G44243
TU55165 other upstream 165239 30455727 ~ 30459331 (-) True AMCG00013409
TU55166 other upstream 186650 30477138 ~ 30478194 (-) False AMCG00013412
TU55168 other upstream 193031 30483519 ~ 30486331 (-) False AMCG00013411
TU55173 other upstream 193031 30483519 ~ 30486331 (-) True AMCG00013411

Expression Profile