RNA id: AMCG00013406


Basic Information

Item Value
RNA id AMCG00013406
length 5869
RNA type mRNA
GC content 0.51
exon number 15
gene id AMCG00013406
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30365872 ~ 30390476 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagaggcacagcGAGTGTGCTCCGTGTGGCGTGAACGACAGGACAGGCGTGTGGTTCCTCTCCTCTGCGtggattacacacacacagactggctGAGCGATTGCCGGTCTCCTCTCTCGCTCCCACTCCCACTCGCACGGTGAGCCCGGGGGCGGTGCGGCGTCTCGTGGGAACGCTGGATGTCTTCCTCGCATGCTGCGCTGACCGCGGGAGCTGGGAGCAGCGGGGACGGCGAGcgCGGTGAGGAGGCACTGGGCCCGCCCATTGTGGTGTGTCCTCAGCCGTGTGCTGACTGCGAGTTGTTCCCCGATGATGATGGCATGACACTGACCCAACGCGAGGCCCACGAGTCGGACATGGACAGCGCCATCGAGAGCACGCACGGCTCCGAATTGTCCGAGGGAGGGCGACCCGAGGACAAGGAGGAGGGCCTGGGGGGGCTCTTCCTGCCTGGAGACAATTCTGGCCGCAGGTCCGGACAGCTGAACCCCTCGGTGACGTCGGGGCTGTCCACCCACTCCACGGCCTCCCTGGTCAGCAGCGAGGAGCAGTTTGAGGACTATGGTGAGGGCGAAGACGTGGACTGCactcccagcagcccctgccCCGATGACGAGACGCGGACCAATGGCTACTCCGACCTGGGCTCCTCTGTCTCCTCCAGCGCTGGGCAGACCCCGCGGAAGATGCGCCACCTGTACAACAGCGAGCTGCTGGATGTGTACTGCTCCCAGTGCTGCAAGAAGGTCAACCTGCTCAACGACCTGGAGGCGCGGCTCAAGAACCTGAAGGCCAACAGccCCAACAGGAAGATAACCAGCACGGCCTTTGGCAGGCAGCTCTTTCACAACAGTAACTTCAGCAGCAGTAATGGCAGCACTGAGGACCTGTTCCGTGACAGCATTGACTCCTGCGACAATGACATCACTGAGAAGGTGAGTTACCTAGAGAAGAAGGTGACAGAGCTGGAGAACGACAGCCTCATGAGCGGAGACCTGAAGTCCAAACTGAAGCAGGAGAACACACAGCTGGTCCACAGGGTCCACGAGCTGGAGGAGCAGATGAAGGACCAGGAGGCGCGGGCCGAGCAGACACTGGAGGAGGAGCTGCGGCGCCACCGAGAAGCCTACAgcaagatggagagagagaagagcacgGAGATCGAGCTGCTCAGCAACAGGGtgcagcagctggaggaggagaacgGCGAGATGACCGTCAACGTGTCCCGGTTAAAGTCACAGTCGGAGAAGCTGGACGAGgaGCGGCAGCGGATGACCGACAAGCTGGAGGACACCAGTCTGCGGCTGAAGGACGAGATGGACCTGTACCGCAAGATGATGGACAAGCTGAGACAGAACCGGCACGAGTtccagaaggagagagaggccaTGCAGGAGCTGATCGAGGACCTGCGGAAGGAGCTGGAGCACCTGCAGCTGTTCAAGCTGGAGACGGAGCGGCCAGGCCGGGGAAGGAGCTCCTCGTCTAGCCTGTCCGAGTTCAACGCCAGGACCCGCGAGATGGAGCTCGAGCATGAGGTCAAGAGACTCAAACAGACCGGGAGGCCCACAGCACTGCCTTACCGCCCTGCTGCCCGCAGGCACACACCAGCCTGGCAGGACTGCCCTCCCGCCAGCAGCGCCCTGAGGAAAACGCACAACCCGTCGCCAAAACATCCAGTCAAGCAGCAGGAATTGAAGTTAATTTCCCAGGACGTCCCCTCTGAGCTCCACCAGCTGCTCCACtctgggctgctgctgctgcccagtCTGCTGGAGAACCAGAAGCTGCGAGACCAGAATGACGACCTAAATGGCCAGATCCTCAGCCTCAGTCTCTACGAGGCCAAGAACCTCTTCGCCACCCAGACCAAGGCCCAGTCTCTGGCTGCGGAGATCGACAACGCGTCCCGGGATGAGCTGATGGAGGCTCTGAAGGAACAGGAGGAGATTAATAACCGGCTGCGGCAGTACATGGACAAGATCATCCTGGCCATCCTGGACCACAACCCCTCCATCCTGGAGATCAAACAATGAGCGCTTCCCATCTGCCCCGCCCGGCTCAAAGCAGACCACGCTTCCTGCGGCCCAGGGGCCACTGAAAATCAAGCCCTTTTGTGTTTACAAGGAGTCCCGGTGCTTCACTGCACTCATCTGTGAATCACCAGAAGATGTGGATATCTCTCAtgcactttttcacattttctattttggtTCTAAgtgttgttaattttattctgttttactTGTCGTTGCCACTGCTGTAGCGTAGCGTACATAGTccgacaaacacacacagggaaaaggCATTGTGTCTGGAAAAACGTTTTAAATACAGAGGGGATtcttttgctgttgttgctgttcttACACATATaaaaggagtgtgtgtgtgtttgtatataaacTACATCTGGGTATGTAGTTACGCTCCCCTGCAGGAATGTAGGAGAGATGCAGTAACACACAAAGAGGCCATGTCGCTGTGCGAGTGGATGGGGGGGGccctgtggagagagacagCAGGTGTTAAAGAGACATGCAAGTGCGTCAGAGAGGCAAGGGGGAAGTGAGTGCTGAGGGCCGGTGTGTGACCGCTGTGCGGAGCTTCATTCTCCCCGGCCTCAGGCCCAGGCGGCTACCAGGTTGTGGGGGGATGGAGCGGCGCCAAGGGCAGCAGACTCCGATGGAGGGATAGGTGAGGGGAGGATGGACTGCCCCCCCATTGAGCACCAGGTGTGAGTGGGTGGAGGGAGGACAGGTTGGGCCATGTTGTGTTGAGGGAGGAGTCAGTTGTGctgggggaggagagggagctgAGAGTGACAGGCAGAAGCCCTGGGTGTCTATGTTGAACTGTGAGACCCACACAATCCTGCACAACTGCCATACTTATAGAGCACGCACATGCAATAagacactcatacacacacacacacacacacccatacaagtacacacatacgcacacacaaacCATTGCCTgtacactcactcacacacacactggcggCCGGGCCGGGCAGGTCTCATCTCGGGGGGGCTTCACTAAAGCACAGAGACCCCCAGCATCACAGCTAGTGTGAGAATCCAAATCTATGAGAAACTGTAGCTTCTGATTGTAtagcattgtattgtattgtctcgcattgtgttgcattttaGTGTCATGGCATCTCAAGATTCAGGAAGGCCTGCCGGGCCGCAGAGGCAGCGGTGGGCATTGTGGTGCCTGCAGACGCACCTTAAACTACTGAGAGAGGAAAATGAATGTTACACACCCAGCTGGGGTTCAGACACGTCTCTGCGGACGTTGTTCAGCCGACAtgcaaacatgcaaacacatgAATGTTCTGTTTGTAAAATCGGTTATTGtgaatgtaaaattacaaaaaataacatatttatatacatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatgtgtgtgtgtgtatctacagaaatatacacatatatgtatacagtatatagttaCTCTGCCAGTGCTTGTCTGGgaagattgtgttttgttttgaaagcgAAGCTATAGGATGCagaagttgtttattttttcatacagaGATACTAACGAAGGGGGAGGGATGCTGGGAAGGTGTAATTAGCTTGTTCTCACTGAGGCTGTGCCACTCAAtgactgtgctttgtgtgttcaGTACTGTAAATCCATGACAGAggcgagtgagagagagagagagagagagagaaagggtggggagaagagaagcagagagaaagagggggagtcTGTCTCCTGTTGTCTCTTAGATGGTTTGAACAGCCATAAAGTGCAaactggaataataataataataataataataataataataaataatcccaAACCTGAGATCAGAGCCATGCTGTCCTGTCAGATGACCCAGAAGCCAGGCAACGCTGCGCCCCAGTGTTTGGGGCTGATACGTGTTGTGACCCGGTGACACTGCCAGGAGAAATAACCTGCAGAAACGTGTCTGCCTGTGCCTGTGGGCTGTGAGTCACACatccacactctctctctctctctatctctctcggCTGCCAGAGGAATCATCCTACTGTAACAATGTCAGGAGAAATAGTGACATTTGTATCAATAGTTTTCAGAAGAACAATGATGGCGAGAGCTGGGTGCGTTTATTGACCTATTGGGTGATACATACccaacaaatataataataataataataataataataataataataatgataatgataataatgataataataataaatgttatttgaCACTGTAAAAGTCATGAATGTATCATGTTGCATTTCACAGCACCTGGTCCCGAGTGTTGAGTTTCCTGTAGGAACGCCAGTGTTAATACAAGAGAGACAGACTGTGTTGCTctagaagtgtttttttattcttttttaaaggtGTTGTAATTAGGCAAtgcttcaaataaacaaacacagactcatacacaacacacagtcactcacacacacacacgcagtctcactcactcacacacggccgcacatatttacacacacacgcacacagacagacacactctcaatcacacacactcagtctccgtcactcacacacacacagaaataacGAACTGCTGTCAGTATGTCGTTCACTGAGATTAGTTTTGCTGTCTCGCACAAACTGTGCTGCGGATTGTGCGCACGTTCTCTGTTTGTGCTCTTCGTGCCTTTCTGTCTCAGCTGTATCACCACGGTCTTTATCTCTCATGCGtttatttgctttgtgttcttctactctttgattgtttttctgccggcgataacaggaaaaaaaagcttttatatatatatcccttttACATTCTTGTCAGTGTctaaacatttttcataactTGTAAATGGTGTACATAAAATAGTTACTATTTGTATTCATGTGCCACACatcacagttttaaaaacaaaagagaaaaagtcttttttacagtttttggagtacaaataaaatgaaaatgtcttaGATTCTGTGTGCTATAAAGAACCTACTGCACAATTTCCTTTGTTGTGGTTAATCAACTTAGAAGCAATATATGATTTGAagggattgttttgttttgttttttatttgtttgttacattAAGATGCATTGGATTTGCACTGACCACTCAACTAATTTGGagttgttggtttattttttgtttgttttttggggggtgggggctgttaAGACAAACTTGTTCCTTTTATTCACATTGTTGGTTTCTGTGTCGGGGAGAGCAATGTAACTTTTCTCACGCTGGTCCAAGCAAGGCCCAGCACTGATGGACGGACTGATGGACTGCACAGTGGCCAGGCCTGGCTCTCTAGCTGTCCACAGCATGGGGCGTGACCCTCTGGGGGGTGACCCTCTTGGGGGCTCAGCTGGTTTGGTGAGGCAGAGACAGCCACACCAGATACCGGTGTACTGGGAATGACAACAGCCAAGCAACTGTTGTCCGCTCCCAACGGTGTCCGGTTGCGGCCTCTCGCTTCTGGGGACGTTTTCGAGGGCTGTTCGTCAAGACCCTGTTTTGCACAGTTCCTTTCAGACTGGGATGAGCAGCACCTCAAAGCTCTCCGATCCGATCCCGGAGCCGGGCCGCGAGGACAGTAATATTGCGTGCCTCAGAGCCCCCAcatcactttgttttgttactttgtAACCTAGCTGCTGATTTCCTGTCATGCTGTACCACTGAGCCGCAGCTCCTGTGTGTCCTGTGAGTTCTGTTCGATCACACGCCGGCTCTGCTAATGTGACTCCTGACGGATAGTTTCGATGTTGTATAAACTTAAAAAGctgtaaataaaagtatttgctTTTGGCATGACTAAAGGA

Function

GO: NA

KEGG:

id description
K12485 RAB11FIP3_4; Rab11 family-interacting protein 3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55048 lncRNA upstream 21949 30342469 ~ 30343923 (+) False AMCG00013399
TU54949 lncRNA upstream 275757 30088803 ~ 30090115 (+) False AMCG00013388
TU54935 lncRNA upstream 300380 30063408 ~ 30065492 (+) False AMCG00013382
TU54727 lncRNA upstream 919174 29434050 ~ 29446698 (+) True G43895
TU54684 lncRNA upstream 1163151 29179098 ~ 29202721 (+) True G43855
TU55072 lncRNA downstream 36148 30426624 ~ 30430649 (+) True AMCG00013408
TU55089 lncRNA downstream 65196 30455672 ~ 30457671 (+) True G44182
TU55241 lncRNA downstream 344060 30734536 ~ 30734795 (+) True G44306
TU55242 lncRNA downstream 346333 30736809 ~ 30737487 (+) True G44307
TU55258 lncRNA downstream 381905 30772381 ~ 30774068 (+) True G44322
AMCG00013401 mRNA upstream 14037 30345321 ~ 30351835 (+) True AMCG00013401
AMCG00013399 mRNA upstream 21867 30339802 ~ 30344005 (+) True AMCG00013399
AMCG00013402 mRNA upstream 49453 30311722 ~ 30316419 (+) True AMCG00013402
AMCG00013400 mRNA upstream 55081 30302820 ~ 30310791 (+) True AMCG00013400
AMCG00013395 mRNA upstream 82316 30279191 ~ 30283556 (+) True AMCG00013395
AMCG00013408 mRNA downstream 34531 30425007 ~ 30429147 (+) False AMCG00013408
AMCG00013407 mRNA downstream 49198 30439674 ~ 30452954 (+) True AMCG00013407
AMCG00013416 mRNA downstream 100513 30490989 ~ 30496613 (+) False AMCG00013416
AMCG00013418 mRNA downstream 135379 30525855 ~ 30534025 (+) True AMCG00013418
AMCG00013415 mRNA downstream 146327 30536803 ~ 30541363 (+) True AMCG00013415
TU55045 other upstream 143663 30218910 ~ 30222209 (+) False AMCG00013396
TU54850 other upstream 437175 29921067 ~ 29928697 (+) False AMCG00013375
TU54772 other upstream 706924 29640623 ~ 29658948 (+) False AMCG00013364
TU54615 other upstream 1261295 29104289 ~ 29104577 (+) True G43802
TU54454 other upstream 1877089 28484273 ~ 28488783 (+) True G43682
TU55098 other downstream 100351 30490827 ~ 30495656 (+) True AMCG00013416
TU55111 other downstream 172892 30563368 ~ 30568219 (+) True AMCG00013417
TU55261 other downstream 386375 30776851 ~ 30777169 (+) True G44325
TU55551 other downstream 1514492 31904968 ~ 31911801 (+) True AMCG00013468
TU55622 other downstream 1882792 32273268 ~ 32283499 (+) False AMCG00013473

Expression Profile