RNA id: AMCG00013407


Basic Information

Item Value
RNA id AMCG00013407
length 2232
RNA type mRNA
GC content 0.61
exon number 14
gene id AMCG00013407
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30439674 ~ 30452954 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTCCACAGAAGCACGGCTCGGCGGGCGGCGGGTCGGGCTCGGGTCCCGCTCCGGGCTCCGGGGCCGCCGGCGGGAAGGGCTCGGGTCACGGGCTGGGCTCCGGCCCTGGCGGCAAGGCGAACGGCGGACTCTACCCGGCTTCCGCCACAGCCATGGCCGCGGTCAAGAAGCCCAAGATGGAGCAGATCCAGGCCGACCATGAGCTGTTCCTGCAGGCCTTCGAGAAACCAACCCAGATATACAGATTTCTGCGCACCAGGAACCTAATCGCGCCCATATTCTTGCACAGAACCCTCACCTACATGGCCCACCGCAACTCCAGGACCAACGCCAGGAGaaaGTCGTTCAAAGTGGACGAGATGTTGACGAAAGTGGAGAAGATGAGAGGAGAACAGGAATCCCACAGcttgGCCTCACACCTGCAGCTCACCTTCACTGGTTTCTTCCATAAAATTGaaAAGCCATCACAAAACTCAGAGAATGAACAAAACTCTGTGTCTCTAGAGGATGTCAGTTGCCCAGTCAAGCAAGTGCCTACAGGTAAAAAGCAGGTGCCTTTGAACCCTGACAACAGCCAAACCAAGCCGGGCAGCTTCCCCTCCCTGGCCGTGTCCAGCAACGAGTTCGAGCCCAGCAACAGCCACATGGTCAAGTCCTACTCGCTGCTCTTCAGGGTCACCCGGCCGGGCAGGAGGGAGCTCAATGGCCTGACCAACGGAGAGACCAACGAGAACATCGGCAAGTTGTCCGCCATCAGCACACACACGGCTCTCCTGTTGCTCATGTGGTGCGCAGCCATCCATACTGCCACTCGCTCTCGTTGTCTTCATGTGACTGAGGAGCCGCCGCCCCGGAAGAAGAGGAGCTCCTCCCACCGCGAAGACGGAGAGACCACATTCGTAGCCCAGATGACTGTTTTCGATAAGAACAGGCGCCTGCAGCTGCTGGACGGGGAGTATGAGGTGTCCATGCAGGAGATGGAGGAGTGTCCGGTCAGCAAGAAGAGAGCCACGTGGGAGACCATCCTGGATGGGAAGAGGTTGCCCCCATTCGAGACGTTTTCTCAGGGACCCACTCTGCAGTTCACGCTGCGCTGGACGGGTGACTCCAGTGACAAGTCCACCGCGCCGGTCGCCAAGCCCCTGGCCACACGCAACTGCGACGCCCCGGCGCTGGAGAGCAAGCCCAGCTCCCTCAAGCCAGCACAGACAGTAGCCGTGAAGGACTCGATCAGTACGGACCTACAGGCGCGCCGGGAGCACATCTCCTATGAGCCCCGGCAGAAGCTGCGCATATTTTACCAGcCTCACCCGAAAGGCGCCCGGATAGACGTGTCAATAAATGAGTGCTACGATGGCTCCTACGTGGGGAACCCTCAGGACATTCACAGCCAGCCCGGCTTCGCTTTCAGCCGCAACGGTCCAGTCAAGAGGACCCCGGTCACTCACATCCTCGCCTGCAGGCCCAAGCGCACGAAGCCCAGCCTGTCGGAGTTCCTGGAGTCGGAGGACggggagctggagcagcagcgCACCTACATCAGTGGCCACAACCGCCTGTACTTCCACAGCGACAGCTGCCTCCCACTGCGGCCGCAAGAGATGGAGGTGGACAGCGAGGACGAGAAGGACCCCGAGTGGCTGCGGGAGAAGACCATCACGGTGAGACGCAGCCACGCCCCCAACAGTACCACGCCCCACCCGTGCCACGCCTACACGGCACCATGTCCTGCTGCTCTGTCAGTCCGGTGCATTGTGATGACTTTATTTTTCCTCCCGCAGCAAATCGAGGAGTTTACGGACGTGAACGAGGGCGAGAAGGAGGTGATGAAGCTGTGGAACCTGCACGTGATGAAGCACGGCTTCATCGCAGACAATCAGATGAACCAGGCCTGCATGCTGTTCGTGGACAAGTGCGGCAGCCAGATCCTGGAGAAGAACCTGTGCCGCAACTTCCTGCTGCACCTGGTCAGCATGCACGACTTCAACCTGGTGAGCATCGTGACCATCGACCGCGCCATGGCCCGGCTCCGCGACGCGCAGCAGCGCAGCGAGAGGGACGAGCCCGGCGACCGCAGCGCCCCACTGCCGGCCCTCACTGTCACTGCCGCCGCCGCCCTGCTGGAGGAGCAGCAGAGCCGAGAGCTGCCCAGCGAGACCGCTGCCGGCGAGAGGGCCCCCGAGCCCGAGTCCGCGGCCACCAAACAGAACAAGAGGCAAAAGCTCTGA

Function

GO: NA

KEGG:

id description
K11463 SUZ12; polycomb protein SUZ12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55072 lncRNA upstream 9025 30426624 ~ 30430649 (+) True AMCG00013408
TU55048 lncRNA upstream 95751 30342469 ~ 30343923 (+) False AMCG00013399
TU54949 lncRNA upstream 349559 30088803 ~ 30090115 (+) False AMCG00013388
TU54935 lncRNA upstream 374182 30063408 ~ 30065492 (+) False AMCG00013382
TU54727 lncRNA upstream 992976 29434050 ~ 29446698 (+) True G43895
TU55089 lncRNA downstream 2718 30455672 ~ 30457671 (+) True G44182
TU55241 lncRNA downstream 281582 30734536 ~ 30734795 (+) True G44306
TU55242 lncRNA downstream 283855 30736809 ~ 30737487 (+) True G44307
TU55258 lncRNA downstream 319427 30772381 ~ 30774068 (+) True G44322
TU55259 lncRNA downstream 321228 30774182 ~ 30774548 (+) True G44323
AMCG00013408 mRNA upstream 10527 30425007 ~ 30429147 (+) False AMCG00013408
AMCG00013406 mRNA upstream 49198 30365872 ~ 30390476 (+) True AMCG00013406
AMCG00013401 mRNA upstream 87839 30345321 ~ 30351835 (+) True AMCG00013401
AMCG00013399 mRNA upstream 95669 30339802 ~ 30344005 (+) True AMCG00013399
AMCG00013402 mRNA upstream 123255 30311722 ~ 30316419 (+) True AMCG00013402
AMCG00013416 mRNA downstream 38035 30490989 ~ 30496613 (+) False AMCG00013416
AMCG00013418 mRNA downstream 72901 30525855 ~ 30534025 (+) True AMCG00013418
AMCG00013415 mRNA downstream 83849 30536803 ~ 30541363 (+) True AMCG00013415
AMCG00013414 mRNA downstream 94689 30547643 ~ 30557225 (+) True AMCG00013414
AMCG00013413 mRNA downstream 107527 30560481 ~ 30562562 (+) True AMCG00013413
TU55045 other upstream 217465 30218910 ~ 30222209 (+) False AMCG00013396
TU54850 other upstream 510977 29921067 ~ 29928697 (+) False AMCG00013375
TU54772 other upstream 780726 29640623 ~ 29658948 (+) False AMCG00013364
TU54615 other upstream 1335097 29104289 ~ 29104577 (+) True G43802
TU54454 other upstream 1950891 28484273 ~ 28488783 (+) True G43682
TU55098 other downstream 37873 30490827 ~ 30495656 (+) True AMCG00013416
TU55111 other downstream 110414 30563368 ~ 30568219 (+) True AMCG00013417
TU55261 other downstream 323897 30776851 ~ 30777169 (+) True G44325
TU55551 other downstream 1452014 31904968 ~ 31911801 (+) True AMCG00013468
TU55622 other downstream 1820314 32273268 ~ 32283499 (+) False AMCG00013473

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051802 False 4263 mRNA 0.43 16 NC_007114.7 35849392 ~ 35865040 (-)
grasscarp (Ctenopharyngodon idella) CI01000046_06349776_06359655.mRNA True 4205 mRNA 0.43 16 CI01000046 6349245 ~ 6361268 (-)