RNA id: TU55072


Basic Information

Item Value
RNA id TU55072
length 1878
lncRNA type sense_over
GC content 0.56
exon number 2
gene id AMCG00013408
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30425007 ~ 30430649 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGTCGCCGCAGCTGTGAGAGCCGGAGCCAGCGGCGCGTCCAGGACACCGGGCCGCAACCAGGGCGTGCATGCCGGCCAGCCCGCCGTCCAGTGCCCTGCAGTGCCAGTACCGGGCGGGCAGTGCAGAAGGAGTCCCTGTGTGAGGAGGCAGGCGTCCCCCGGTAAATGGTGTCTCCCACCATGAAGGCTGTGGTGGACGCTGTCTGGGCGGTGTGGAGCATCGGGGCCTCCATCTACGACTACCTGCACACCAGCGCAATGGAGGAGCGGATCAACGCCCTGGAGACGGTCATCACAGTGCACCAGTGTGTCATTGGAGCGCTGTCCGCCAGCCTCATCATGCTGGTCACCTACATCCTGCTGAGGAAGCACTGACCCATCCCTTCCGCGCACCGCTCGGACCCTGACCACTGCCTTAACCGCCACAGCCCGCCGCGCCGCAATGCCGGACCGTCTGCCGGGGATGCCTGTGCCGCTGCCATCTGCTGCTGGAGTGACTGCTGTGATCGCAGCACACAGCTCGGCTGAGAGCGAGCCGGGCTTCACCACTCCGCCATCTTTAACTCGCGGTGATCAGAACCTGTCAGAACAGGCCCGATAGAACCAGAGCTGTGGAACAAAGGGAAGCAGATGTGAACCACTGGCTGCGTGGATGGATGAGTGGCTGCATGGGGACACAGCGCTGTGCCGCACTGTTTCCTGCAGAGTTCAGCTGGTGCAGATAGTGAGGGATGTTCAGTCCATTGACATCTATGAAGTGACCTTACGCCCTGCCGGAGGCCGTGGCCAATTCCTATTGGTTGACAGAATGCTAGTTACCTTGGGGGGAGTTcctggaaacttttttttactgtttttggCCTCCTTTATGATTGAGTGGTTGGCGGGATGGTGTGGTGATCTTGCTGAGATGGGTGGCTTGAGCAGGTGAGCAGTTGGGCTGCGGATGTGGGGTGGGGGCTTCATCTCAGCTGTGCGGGAGTTGGTCACAGCTGAGCtgagcttttttatttaaatatgtgagaTATTGTAGGAGAGGTTACTCATCCTCCCCCTTCACCCCCCAGTCCTCCAGCGACTCCACAGCAGCTGGATGACAGAAATTCAGAGGCCGGGTGGGGGGCAGCTCCTGGGACTTTTAGCCCACAGCAGACTCGTCCTAATTTCAGAGTGTGCTAGAAATTAATCTGCCTCACgtttattaatataatcataCTAATAGTTCGGATGAGTATCCGAGCCCCTCCTGCCCCAGACACGCACAGGGCCACAGGGCGGTGCTGCTCGGCTGCGTTGCGCTCCAGCACAGCTGCGGTTCTGACCCGTTTCTTGTGTTCTAGCAGCAAGGGACAATGAAGTGGCAGGAAAaaggaattaataaaaaaacttttaacatttattgCAAGTCTATTTGTGTTGCTGCTCTTGTGAATTGTCCCGTATGAATGGCAGTGTGCTGGCGGGGCCCCAGGCCTGTTCGCCCCTCACCAGGCTGTGGCTGAGACTCGGGTCTCCACCTACAGCCCGGTTCTGCGCTGCGACACCGACGGAGCCCAGTCTCGATCGCAAGGAGGTGGAGGAATGGAAGGATTGTGTAATGGTGACATGCAGGTGGTTTATAAagcattattttgagtaattttgCTACGATGTTGCAGTTAAGGTTACATTTTGGGATGGGGTTATGGGTCCCACCTCAACTTAGGCTTTCATTAAAGATGGGGTTGCTTTTCAGCGGTGTTGACTGTTTGTGGTGCGGCTGTGAAGGGGAACCAGCTTCAATGTTGCTGTTGGGCTCAGGCTATGGGCTCAGGTACCCTCCTGATGTAACCGTTGTTTACAGTGGCAGCTTCatgaagtaattaaaataaaataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55048 lncRNA upstream 82701 30342469 ~ 30343923 (+) False AMCG00013399
TU54949 lncRNA upstream 336509 30088803 ~ 30090115 (+) False AMCG00013388
TU54935 lncRNA upstream 361132 30063408 ~ 30065492 (+) False AMCG00013382
TU54727 lncRNA upstream 979926 29434050 ~ 29446698 (+) True G43895
TU54684 lncRNA upstream 1223903 29179098 ~ 29202721 (+) True G43855
TU55089 lncRNA downstream 25023 30455672 ~ 30457671 (+) True G44182
TU55241 lncRNA downstream 303887 30734536 ~ 30734795 (+) True G44306
TU55242 lncRNA downstream 306160 30736809 ~ 30737487 (+) True G44307
TU55258 lncRNA downstream 341732 30772381 ~ 30774068 (+) True G44322
TU55259 lncRNA downstream 343533 30774182 ~ 30774548 (+) True G44323
AMCG00013406 mRNA upstream 36148 30365872 ~ 30390476 (+) True AMCG00013406
AMCG00013401 mRNA upstream 74789 30345321 ~ 30351835 (+) True AMCG00013401
AMCG00013399 mRNA upstream 82619 30339802 ~ 30344005 (+) True AMCG00013399
AMCG00013402 mRNA upstream 110205 30311722 ~ 30316419 (+) True AMCG00013402
AMCG00013400 mRNA upstream 115833 30302820 ~ 30310791 (+) True AMCG00013400
AMCG00013407 mRNA downstream 9025 30439674 ~ 30452954 (+) True AMCG00013407
AMCG00013416 mRNA downstream 60340 30490989 ~ 30496613 (+) False AMCG00013416
AMCG00013418 mRNA downstream 95206 30525855 ~ 30534025 (+) True AMCG00013418
AMCG00013415 mRNA downstream 106154 30536803 ~ 30541363 (+) True AMCG00013415
AMCG00013414 mRNA downstream 116994 30547643 ~ 30557225 (+) True AMCG00013414
TU55045 other upstream 204415 30218910 ~ 30222209 (+) False AMCG00013396
TU54850 other upstream 497927 29921067 ~ 29928697 (+) False AMCG00013375
TU54772 other upstream 767676 29640623 ~ 29658948 (+) False AMCG00013364
TU54615 other upstream 1322047 29104289 ~ 29104577 (+) True G43802
TU54454 other upstream 1937841 28484273 ~ 28488783 (+) True G43682
TU55098 other downstream 60178 30490827 ~ 30495656 (+) True AMCG00013416
TU55111 other downstream 132719 30563368 ~ 30568219 (+) True AMCG00013417
TU55261 other downstream 346202 30776851 ~ 30777169 (+) True G44325
TU55551 other downstream 1474319 31904968 ~ 31911801 (+) True AMCG00013468
TU55622 other downstream 1842619 32273268 ~ 32283499 (+) False AMCG00013473

Expression Profile