RNA id: AMCG00013409


Basic Information

Item Value
RNA id AMCG00013409
length 1296
RNA type mRNA
GC content 0.65
exon number 8
gene id AMCG00013409
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30455727 ~ 30464091 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGATAGAGGCGGACGTGTTGCTGCAGGAGGCGAAGGAGAGCATCGAGGCGGCGCAGAACTACCGGAGCGAACTCCAACAGCGCCTTCAGGGGCTTACACAGGCGCGAAAACAGgTGCGTGGCAGTGCTCTACAGACGCGCGAGGTCCTCAGGCAGCACTTCCAAGAGCTGCAGGCATCTCTGGGCCGCCTGCTGGATGAGCGCCTGGCCGCCCTACTGCTCGAGGTGGACGCCATTGAGACGGACAGCGTGCGGCCGCTGGACGACTGCCAGAAACTCATCGAGCAAGGAGTGAGCGCGGCTGAGGAGCTGCTGAGGGAGGgTGAGGCAGCTCTGCGCTGTGGCGTCAATGAGAAGGATGACAAGCTGGGCAGCTTCACCAAGAAGGCCCTGCAGATCCAGCTGGACAGTCTGCCCGAGGTGCCCTCCCTGGTGGACGTGCCTTGCCTGTCAGCACAGCTGGACGACTCCCTGCTGCCGGGGGTGCGCGACCGCATCTTCAGCCATGGCAGCGTGGCATCCCACCCCCCCGTGCAAATCGATGAGCTAgTGGACGAGGACTTCGTGGTGCAGGACTACCGGCTGCAGTACCGGAGGGGCGCGCTGGGGCAGTATGAGGACGCCTACGTGGGCCGGGACACCGAGTCCATCGTGCTGCAGCTTGACCCGCACACCGAGTACCTGTTCCGCGTGTGCGCCAGGGGGGAAGGCCGCCGCGAGTGGAGCCCCTGGAGCGTCCCGCAGCCGGCCTTCACCACGCTGGCGCCGCACGAGTGGCTGGCGGGCAGCGAGGGCTACAGTCTGAGCAGCCGGAGGAACATCGCGCTGCGCAACGACAGCCTGGCAGCGCGGGGGGGCGTGCTGTACTCCAGTGCCCCCACGTACTTCTGCGGACAGACCCTCACCTTCCGGGTGGTGAGCGCAGGGCAGCCGGAGCACAGGGACAGCGTGGGTGTGTGCGTGGACTGTGACGCCGGGGTGGAGTCGCTGCAGAGGGACCAGGCGGTCTGCATCTCCACCAGCGGTGCCGTGTATGTCAATGGCAAGGAGATGACCAACCAGCTGCCCGCGGTGTCGGTGGGCTCCTCCGTGACCTTTGACATGGAAGTGGTTGGCCTGTTTCCTGTGAACAACAACAATGTCAGCGAGGGGGGCGGTGGCTTCAAGCTGAGGGTGACGATTGGCTCAGGGAACAGGGAAGTGGTGTTCGATTGGCTGCTGGATCAGAGCGTGGACAGCCTGTTCTTTGGCTGCTCCTTCACTTACCCAGGCTGGAAGGTGCTGGTTTTCTGA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55124 lncRNA downstream 1797 30384686 ~ 30455606 (-) True G44213
TU55141 lncRNA downstream 146637 30307026 ~ 30310766 (-) True G44230
TU55012 lncRNA downstream 282097 30173492 ~ 30175306 (-) False AMCG00013390
TU54958 lncRNA downstream 367256 30088803 ~ 30090147 (-) True G44086
TU54905 lncRNA downstream 395769 30040205 ~ 30061634 (-) True AMCG00013384
TU55187 lncRNA upstream 69880 30533971 ~ 30539317 (-) True G44261
TU55177 lncRNA upstream 76222 30540313 ~ 30542858 (-) True G44256
TU55180 lncRNA upstream 76577 30540668 ~ 30562691 (-) False G44256
TU55192 lncRNA upstream 87298 30551389 ~ 30552050 (-) True G44264
TU55183 lncRNA upstream 89690 30553781 ~ 30599051 (-) True G44259
AMCG00013410 mRNA downstream 20662 30430664 ~ 30436741 (-) True AMCG00013410
AMCG00013403 mRNA downstream 116942 30333448 ~ 30340461 (-) True AMCG00013403
AMCG00013404 mRNA downstream 124703 30322265 ~ 30332700 (-) True AMCG00013404
AMCG00013405 mRNA downstream 166915 30286642 ~ 30290488 (-) True AMCG00013405
AMCG00013390 mRNA downstream 272979 30167981 ~ 30184424 (-) True AMCG00013390
AMCG00013412 mRNA upstream 4539 30468630 ~ 30482326 (-) True AMCG00013412
AMCG00013411 mRNA upstream 19214 30483305 ~ 30486316 (-) False AMCG00013411
AMCG00013419 mRNA upstream 43860 30507951 ~ 30521671 (-) True AMCG00013419
AMCG00013420 mRNA upstream 59816 30523907 ~ 30533879 (-) True AMCG00013420
AMCG00013421 mRNA upstream 159885 30623976 ~ 30635826 (-) True AMCG00013421
TU55155 other downstream 34378 30399887 ~ 30423025 (-) True G44243
TU55119 other downstream 166536 30288292 ~ 30290867 (-) False AMCG00013405
TU55007 other downstream 288267 30165817 ~ 30169136 (-) False AMCG00013390
TU54953 other downstream 374058 30081036 ~ 30083345 (-) False AMCG00013386
TU55166 other upstream 13047 30477138 ~ 30478194 (-) False AMCG00013412
TU55168 other upstream 19428 30483519 ~ 30486331 (-) False AMCG00013411
TU55173 other upstream 19428 30483519 ~ 30486331 (-) True AMCG00013411
TU55169 other upstream 19625 30483716 ~ 30486331 (-) False AMCG00013411
TU55170 other upstream 19625 30483716 ~ 30486331 (-) False AMCG00013411

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000046_06330849_06347081.mRNA True 1804 mRNA 0.51 9 CI01000046 6330849 ~ 6347379 (+)