RNA id: TU55165


Basic Information

Item Value
RNA id TU55165
length 2468
RNA type TUCP
GC content 0.52
exon number 4
gene id AMCG00013409
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30455727 ~ 30464091 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAGAACTCCAGTCAGTCTCCCaacatctctctccctctctcctccaggTGGACGAGGACTTCGTGGTGCAGGACTACCGGCTGCAGTACCGGAGGGGCGCGCTGGGGCAGTATGAGGACGCCTACGTGGGCCGGGACACCGAGTCCATCGTGCTGCAGCTTGACCCGCACACCGAGTACCTGTTCCGCGTGTGCGCCAGGGGGGAAGGCCGCCGCGAGTGGAGCCCCTGGAGCGTCCCGCAGCCGGCCTTCACCACGCTGGCGCCGCACGAGTGGCTGGCGGGCAGCGAGGGCTACAGTCTGAGCAGCCGGAGGAACATCGCGCTGCGCAACGACAGCCTGGCAGCGCGGGGGGGCGTGCTGTACTCCAGTGCCCCCACGTACTTCTGCGGACAGACCCTCACCTTCCGGGTGGTGAGCGCAGGGCAGCCGGAGCACAGGGACAGCGTGGGTGTGTGCGTGGACTGTGACGCCGGGGTGGAGTCGCTGCAGAGGGACCAGGCGGTCTGCATCTCCACCAGCGGTGCCGTGTATGTCAATGGCAAGGAGATGACCAACCAGCTGCCCGCGGTGTCGGTGGGCTCCTCCGTGACCTTTGACATGGAAGTGGTTGGCCTGTTTCCTGTGAACAACAACAATGTCAGCGAGGGGGGCGGTGGCTTCAAGCTGAGGGTGACGATTGGCTCAGGGAACAGGGAAGTGGTGTTCGATTGGCTGCTGGATCAGAGCGTGGACAGCCTGTTCTTTGGCTGCTCCTTCACTTACCCAGGCTGGAAGGTGCTGGTTTTCTGACCCAGCCCGGCCCGCAGGGTGCGACCCCTTGAATTTAGAGGTGCGGGCAGCGTCTTGGAACCTGTCCACAACACAACACGAACTGATGCTGTCCGAGGAAGAGACCCCTTTAGAGAGCTAGCATTGTTTGTTAAATTGAAGTTGTGAGCCAAGATGCCAGCCTGCCCCATTTCCTGCAGGGGAATTCAAAGGGATTGGTGGGTCAGAGACAGGAAAGCTTGTTACATGTGCtaattaaacataattcatccaattaagcaattaagagccTGGCTAGATTGAGGAACAGAAGGCTGTGCTGCAGTCTCCTCTCACAGGGTAactgcctttttatttattttagtattttgcaGATTCCTAACAACagtattttctatatatatatatatatatatatatataatcaattgcaataatatatatatatatatatatatatgagagagagagagagagagggatgctTATCTTAGAATGAAGTGCCTTAGaacatttaatatttgacttttcccctcctcttcctcctccagcatatagtattttcagttttttttaaatatgtatttgcagtTTATAAATTGTCTTTTTATAACTTTAGTTTGATAGAGATGTGTGAATGTGAACGGATTAAAAGTGTAGCGAAGCAGAGCGGAGCTGCTTTAGTCTGGATGTAAAGGTGATTGTGGGCCAAGCTCTCGCCTCATGTCTGAACTGTAGAGAAATGTCCTCTGTCCGATGGTTCAATCCCAGTGAAGCCGGGACAGATGAGTGGCTCCGGTGGACCATCTCCATCCACACCCACTCTTTAGAGACGAGGGGCCAGGGGGTTGGCTTTGCTTCAGAAGTACGGCAGCGGCTGCTCAGTACAGCCAGTTCTGTCCCCCAGGTCGATCATGAGCATCACCTTGCTGAAGTATTTCAGAAACTCGGGAGCACTCCTCAGTTGGACTTTCCATTCCCTCCCCGGCGCTCTGCTGCAGCACGGGCAGCTCTCTCCCTGCAGGCCAGAGCCGTCTGTGGGCCTCACTGCACACGCAGCGCCAGACTTTACAATGGAAGAGTCCTTTATCAACCATAAGTCTCCTCACTCCCGACAGCGgccagattttttttgttttttgtaatgaacCTCATTGTCTCACATGTGGGGGGTCAGATTACACTTAATCTTAGCTGCTATAgagtgcaaacacacacacacagctattaAACCACAGTGGGATCAGGGGACGGATTAGAAACAACATCTCCTCCCCCTCACACACCTTGTGAAACAGAAGCCCCAGAGGTGAGGGTAGTTTATAGAGCAGGGCAGCcttaacacacaaacataagGCATAACTGGAATCTTGAACCAGTGGGACAGTGTTGTGTATCAGTGAGGCCTGAATGTGTGAATGAACAGgtactttttttattcttccaggTTGTTAAATATTAAGACAAGCTTCCAGTCCCAGTTGCTTCTGCTGCCCCTCCTGCCTCAGCTGTAGTCACCCCGTGTGCTCAGCACCTTTACTGAAAGCTGTGAAAGCGCAGTTGCATTGAGCTTGGGGGTGAGCCCTGTTCTTACCTCAGTATTGTGGCGGCGCTGCCTGGCCTGGTTCTGCTCGCTGTTTGCATGCGCTGTGCCGCAGGCCACGGTCACGGTCACTGAATAAAGTCCATGTTTTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55124 lncRNA downstream 121 30384686 ~ 30455606 (-) True G44213
TU55141 lncRNA downstream 144961 30307026 ~ 30310766 (-) True G44230
TU55012 lncRNA downstream 280421 30173492 ~ 30175306 (-) False AMCG00013390
TU54958 lncRNA downstream 365580 30088803 ~ 30090147 (-) True G44086
TU54905 lncRNA downstream 394093 30040205 ~ 30061634 (-) True AMCG00013384
TU55187 lncRNA upstream 74640 30533971 ~ 30539317 (-) True G44261
TU55177 lncRNA upstream 80982 30540313 ~ 30542858 (-) True G44256
TU55180 lncRNA upstream 81337 30540668 ~ 30562691 (-) False G44256
TU55192 lncRNA upstream 92058 30551389 ~ 30552050 (-) True G44264
TU55183 lncRNA upstream 94450 30553781 ~ 30599051 (-) True G44259
AMCG00013410 mRNA downstream 18986 30430664 ~ 30436741 (-) True AMCG00013410
AMCG00013403 mRNA downstream 115266 30333448 ~ 30340461 (-) True AMCG00013403
AMCG00013404 mRNA downstream 123027 30322265 ~ 30332700 (-) True AMCG00013404
AMCG00013405 mRNA downstream 165239 30286642 ~ 30290488 (-) True AMCG00013405
AMCG00013390 mRNA downstream 271303 30167981 ~ 30184424 (-) True AMCG00013390
AMCG00013412 mRNA upstream 9299 30468630 ~ 30482326 (-) True AMCG00013412
AMCG00013411 mRNA upstream 23974 30483305 ~ 30486316 (-) False AMCG00013411
AMCG00013419 mRNA upstream 48620 30507951 ~ 30521671 (-) True AMCG00013419
AMCG00013420 mRNA upstream 64576 30523907 ~ 30533879 (-) True AMCG00013420
AMCG00013421 mRNA upstream 164645 30623976 ~ 30635826 (-) True AMCG00013421
TU55155 other downstream 32702 30399887 ~ 30423025 (-) True G44243
TU55119 other downstream 164860 30288292 ~ 30290867 (-) False AMCG00013405
TU55007 other downstream 286591 30165817 ~ 30169136 (-) False AMCG00013390
TU54953 other downstream 372382 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other downstream 372382 30081036 ~ 30083345 (-) True AMCG00013386
TU55166 other upstream 17807 30477138 ~ 30478194 (-) False AMCG00013412
TU55168 other upstream 24188 30483519 ~ 30486331 (-) False AMCG00013411
TU55173 other upstream 24188 30483519 ~ 30486331 (-) True AMCG00013411
TU55169 other upstream 24385 30483716 ~ 30486331 (-) False AMCG00013411
TU55170 other upstream 24385 30483716 ~ 30486331 (-) False AMCG00013411

Expression Profile