RNA id: AMCG00013410


Basic Information

Item Value
RNA id AMCG00013410
length 2166
RNA type mRNA
GC content 0.58
exon number 19
gene id AMCG00013410
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30430664 ~ 30436741 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGGATAACTTTAGCGCCAACATCGATAGCTGCACAATAACCGGCAAGCATGGCGGAAATTATCCAGCAGAGGATAGAGGACCGGATCCCGGAGCTGGAACAGCTGGAGAGAGTCGGCTTGTTTACCAAGAAGGAAGTGAAGGCCATGATCAAAAAAGCCACGGCTCTGGAATATAAACTGCACAGGCGAATAATCTGCAAAGAGGATTTCATTACCTACATACAGTATGAAATTAACGCCTTGGAGCTGATCAAGAAAAGAAGAACACGCACGGGGTACAGTTTTAAGAAAGACGAGATCGAGTTCTCCATCGTTCACAGGATACACAACGTTTTCAAACGTGCGACTGGGAAGTGGAAGgatgatgtgcagcTGTGGCTGTCCCATATTGCTTTCCTGAAGAAGTGGAACACAAAGATCAAACTGAGCAAAGTGTTCTCCTCAATGCTGGCCATCCACCCTGAGAAACCAGCACTGTGGCTGATGGCTGCGAAGTGGGAGATGGAGGATTGTGGCTCATCGGAGAGCGCCCGGCACCTGTTCCTGAGGGCACTGCGCTTCCACCCCGACAACAGCAAGGTGTACCAGGAGtattTCCGAATGGAGCTGATGCATGCAGAGAAGTTGCGGAAACAGAAGTTGCAGCTGGAGCAGGCCAACATCGACTTGGGGGAGTACAAGTTCTCGGAGGAGATCGTAAGTGGCAAGCTGGCTGAGGTTGTTTACAGAGACGCCACCCAGAAGATCCCAGGGGCCCAGTTCATGCTGTCTTTGCTGACCGTCGCCCGTCTGTTTGACTTCACCCAGGAGCTGCAGCAGACCATCCTTCAAGATCTCCAGTGCGCACACGCCAATGACCCCATGACCTGGGACTTCCTGGCGCGGCGGGAGCTGGAGGCGGGTCCTGAGACGGGGGCGGAGTCTGTGTCGGCGCAGAGCCGGGCGGCTGCAGCGGCACACAGAGAGGAGCGCTCCTGTCAGGAGAGGTTCCTCAGGAAGACCAACAACCAGGACCTGAAGGACAAAAGACAGgagaggctgctgtctgtgttcCAGAGGGCCCACGACGCCTCGCTGCTGGAGGAGCCGCTGTATAAGAAATGGCTTCAGGTGCTGCAGTCTCTGGGACGCACACAGGCGGCCGAGGAGGTGGCTCTCGCGGCAACGAGGAGCTTCAGCCGGTCGGTGGAGACGTGGTGCGCCAGCCTCTCGGTGCTGCTGGAGCTGGGTGCGGCCGGCATTGGCGCGGCGTTTGAAGAGGCCCTCTCCCTCCTCAACCCCAAGGAGAGCCTGCCCGTGTGGAGGCTGCGGGTGGCGTGGAGTGAGTCTCACCAGAGCGCCGAGGAGACCGCTGCCCTCTACCAGAAGGGGCTGCTGTCCCCGGTGGCCAGCGTCTCTGTGGAGGTGAAGGAGCGCTTCCTGGACTGGTCGTACCGCAGCGGGGGCTACAAGCAGGCGAGGCGGGCTTTCGTCAGCCTGCACGAGAGCCGGCCCTTCTCCAAAGAGTTCTTCAGCACCATGATCCGGATCGAGAGGGAGCAGGAGCCGCCACGGATGGAGCGCCTGAGGGACTGCTACGAGCGCGCGCTGCGGGAGTTCGGCTCCGGGGACGCCGAGCTGTGGCTAGAGTACATCCGGGAGGAGCTGCAGCAGCCGCAGGGACGCCCTGAGAACTGTGGCAAGCTGCACTGGAGGGCGCTGCGTAGCCTGGAGGGGGAGGACGTGGACCGCTTCATCACTCAATACACCCTGCTACAGACCGGACACCTGTGACACCCCACCGATGTGCCCGCCGGGCACTGCACCCGGGTCGCCGGTCCCCTGTGGTGGAGCAAGCACCCCCCATCTCGGAGTTTCTGATTTGTTTCTGTCTGGTTGCTCTGTGGACGTGTCTCCGGGTGCCACACAGATGCTTTGTTGTGAGTTTCGTTCCCAATGAAGATGGAGAGACAGTCACCAGCCTTTCAGCACGATCTGatagggggagggagggggttcTTGTAAACTGGTTTCAAGGCTGGATCTGTTTTGGTCACACACAGTGATCTGAAGTGCCCAGATGTGACCCACTGTGACTGTTCTACCTGAATGACTTAATATTTTGTACACAACTGACCTGTAACCATTCATACTGTCATGTCCATAAATAAAACTTGCCCATGACa

Function

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K14557 UTP6; U3 small nucleolar RNA-associated protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55141 lncRNA downstream 119898 30307026 ~ 30310766 (-) True G44230
TU55012 lncRNA downstream 255358 30173492 ~ 30175306 (-) False AMCG00013390
TU54958 lncRNA downstream 340517 30088803 ~ 30090147 (-) True G44086
TU54905 lncRNA downstream 369030 30040205 ~ 30061634 (-) True AMCG00013384
TU54897 lncRNA downstream 419964 29950840 ~ 30010700 (-) False G44034
TU55187 lncRNA upstream 97230 30533971 ~ 30539317 (-) True G44261
TU55177 lncRNA upstream 103572 30540313 ~ 30542858 (-) True G44256
TU55180 lncRNA upstream 103927 30540668 ~ 30562691 (-) False G44256
TU55192 lncRNA upstream 114648 30551389 ~ 30552050 (-) True G44264
TU55183 lncRNA upstream 117040 30553781 ~ 30599051 (-) True G44259
AMCG00013403 mRNA downstream 90203 30333448 ~ 30340461 (-) True AMCG00013403
AMCG00013404 mRNA downstream 97964 30322265 ~ 30332700 (-) True AMCG00013404
AMCG00013405 mRNA downstream 140176 30286642 ~ 30290488 (-) True AMCG00013405
AMCG00013390 mRNA downstream 246240 30167981 ~ 30184424 (-) True AMCG00013390
AMCG00013392 mRNA downstream 266186 30155262 ~ 30164478 (-) True AMCG00013392
AMCG00013409 mRNA upstream 20662 30457403 ~ 30464091 (-) False AMCG00013409
AMCG00013412 mRNA upstream 31889 30468630 ~ 30482326 (-) True AMCG00013412
AMCG00013411 mRNA upstream 46564 30483305 ~ 30486316 (-) False AMCG00013411
AMCG00013419 mRNA upstream 71210 30507951 ~ 30521671 (-) True AMCG00013419
AMCG00013420 mRNA upstream 87166 30523907 ~ 30533879 (-) True AMCG00013420
TU55155 other downstream 7639 30399887 ~ 30423025 (-) True G44243
TU55119 other downstream 139797 30288292 ~ 30290867 (-) False AMCG00013405
TU55007 other downstream 261528 30165817 ~ 30169136 (-) False AMCG00013390
TU54953 other downstream 347319 30081036 ~ 30083345 (-) False AMCG00013386
TU54954 other downstream 347319 30081036 ~ 30083345 (-) True AMCG00013386
TU55165 other upstream 18986 30455727 ~ 30459331 (-) True AMCG00013409
TU55166 other upstream 40397 30477138 ~ 30478194 (-) False AMCG00013412
TU55168 other upstream 46778 30483519 ~ 30486331 (-) False AMCG00013411
TU55173 other upstream 46778 30483519 ~ 30486331 (-) True AMCG00013411
TU55169 other upstream 46975 30483716 ~ 30486331 (-) False AMCG00013411

Expression Profile