RNA id: TU55170


Basic Information

Item Value
RNA id TU55170
length 852
RNA type TUCP
GC content 0.53
exon number 3
gene id AMCG00013411
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30483305 ~ 30486331 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCTTCCGGGTCACGCTAGTTACTCTTCATATTGACAGAGCCGCAGATAGCGCATTGTATACATGTTAAACAACGGCAATATTAATCCTGAAACACGCAGTTATTTCACTCCAACCTGTCAGTCCGGTAAAAGCTTGCGGGGAGAGAGCAGCACACCCAGTCTCTGTACCCCCGAGTCACCGGGAGGAGGATGAAGGTGAAGATTAAGCAGTGGAACGGCGTGGCGTCCTGGCTCTGGGTCGCCAACGACGAGAACTGTGGCATCTGCAGGATGCCCTTCAACGGCTGCTGCCCCGACTGTAAGGTGCCGGGGGACGACTGCCCGCTGGTGTGGGGCCAGTGCTCCCACTGTTTCCACATGCACTGCATCCTCAAGTGGCTGAACTCGCAGCAGGTTCAGCAGCAGTGCCCAATGTGCCGCCAGGAGTGGAAGTTCAAAGAGTGACGCCGTTCTCCGCTTGACGAGGAGAGGGAGTCAAAGTCACCTACCCCTCTGCCTGATGCGGCCCCAAGGGTGGGACACTTCAGCTCTTCCAGTGTGTGCCATCCTCACAGGATATTGATCCAGCCttaatttattcttaattaCCTAATTGACTCTCTCAATGGGAAGAGGCGTGATGTCCCATCCTCGGCGGTAGAGGGTGCTAGTTGGATCAGGCTCAGTTGTGACTGGGTGCAGGTGCTGTCCATTGTGATACACTGCTTCAGAGGAGTTTCTGCAGTGCTGAACTCAACCCCCCCTCCTGGTCTGGATtcctgtgcatgtgtgcgtgggTGTCCTGAAACTGGGAGACTTGTGACATGCAgtgaattttgtttttacatataacaataatactcaaataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55124 lncRNA downstream 28110 30384686 ~ 30455606 (-) True G44213
TU55141 lncRNA downstream 172950 30307026 ~ 30310766 (-) True G44230
TU55012 lncRNA downstream 308410 30173492 ~ 30175306 (-) False AMCG00013390
TU54958 lncRNA downstream 393569 30088803 ~ 30090147 (-) True G44086
TU54905 lncRNA downstream 422082 30040205 ~ 30061634 (-) True AMCG00013384
TU55187 lncRNA upstream 47640 30533971 ~ 30539317 (-) True G44261
TU55177 lncRNA upstream 53982 30540313 ~ 30542858 (-) True G44256
TU55180 lncRNA upstream 54337 30540668 ~ 30562691 (-) False G44256
TU55192 lncRNA upstream 65058 30551389 ~ 30552050 (-) True G44264
TU55183 lncRNA upstream 67450 30553781 ~ 30599051 (-) True G44259
AMCG00013412 mRNA downstream 1390 30468630 ~ 30482326 (-) True AMCG00013412
AMCG00013409 mRNA downstream 19625 30457403 ~ 30464091 (-) False AMCG00013409
AMCG00013410 mRNA downstream 46975 30430664 ~ 30436741 (-) True AMCG00013410
AMCG00013403 mRNA downstream 143255 30333448 ~ 30340461 (-) True AMCG00013403
AMCG00013404 mRNA downstream 151016 30322265 ~ 30332700 (-) True AMCG00013404
AMCG00013419 mRNA upstream 21620 30507951 ~ 30521671 (-) True AMCG00013419
AMCG00013420 mRNA upstream 37576 30523907 ~ 30533879 (-) True AMCG00013420
AMCG00013421 mRNA upstream 137645 30623976 ~ 30635826 (-) True AMCG00013421
AMCG00013430 mRNA upstream 206744 30693075 ~ 30697703 (-) True AMCG00013430
AMCG00013432 mRNA upstream 211909 30698240 ~ 30700665 (-) True AMCG00013432
TU55166 other downstream 5522 30477138 ~ 30478194 (-) False AMCG00013412
TU55165 other downstream 24385 30455727 ~ 30459331 (-) True AMCG00013409
TU55155 other downstream 60691 30399887 ~ 30423025 (-) True G44243
TU55119 other downstream 192849 30288292 ~ 30290867 (-) False AMCG00013405
TU55007 other downstream 314580 30165817 ~ 30169136 (-) False AMCG00013390
TU55745 other upstream 2079429 32565760 ~ 32567952 (-) True G44719
TU55769 other upstream 2135850 32622181 ~ 32623918 (-) False AMCG00013488
TU56122 other upstream 3191893 33678224 ~ 33678907 (-) True G45037
TU56130 other upstream 3206513 33692844 ~ 33699528 (-) True AMCG00013531
TU56648 other upstream 6472846 36959177 ~ 36959914 (-) True G45468

Expression Profile