RNA id: TU55166


Basic Information

Item Value
RNA id TU55166
length 559
RNA type TUCP
GC content 0.55
exon number 3
gene id AMCG00013412
representative False

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30468630 ~ 30482326 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACGCAGGATGGCTGCTATGCACAGGTACCGCCGTCAGCGTGtgtttgttcatatttattgtCACTAAGAAagacatcaaaataaaaccaatcgTTATTAGTCTAGCATAGTGCATAGCATAGAGTCatcaattacaaaacaacacagaacatgtgtttgtgctgcagaTTTTGAGGCTGTTTTAACTTTCTCCTTGTGTCTCTCAAGCCCGAGATCCACGGAGCCACTGCCTGAGGAAGAGCAGGAGCagCAGCCTCTTATGGAGAGCGAGGGAAAGGGAGCAGGGGAGAGGGAGGATGCTGGGAAGGAGGTGAAGGGAGGCGTCCCCACTCAGCATGGAGAAGACCCCCCCAGTGCAGCCGAAGACTCCGGGGTGACAGTGCCCCCCTTTCTGGAGGGCGAGCTGGaggagcagacagacagaccactGACAGACAGAGTGCCGATGGATGCAGGACGCAGCCAGACCGCCTCCCGGCCCCCGTCAGGGAGCAGCAGGATGCAGAGCAGCCGGTCCGGTGAGCAACTCTTGCAATACAGAACCCCCCATGTCCCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55124 lncRNA downstream 21532 30384686 ~ 30455606 (-) True G44213
TU55141 lncRNA downstream 166372 30307026 ~ 30310766 (-) True G44230
TU55012 lncRNA downstream 301832 30173492 ~ 30175306 (-) False AMCG00013390
TU54958 lncRNA downstream 386991 30088803 ~ 30090147 (-) True G44086
TU54905 lncRNA downstream 415504 30040205 ~ 30061634 (-) True AMCG00013384
TU55187 lncRNA upstream 55777 30533971 ~ 30539317 (-) True G44261
TU55177 lncRNA upstream 62119 30540313 ~ 30542858 (-) True G44256
TU55180 lncRNA upstream 62474 30540668 ~ 30562691 (-) False G44256
TU55192 lncRNA upstream 73195 30551389 ~ 30552050 (-) True G44264
TU55183 lncRNA upstream 75587 30553781 ~ 30599051 (-) True G44259
AMCG00013409 mRNA downstream 13047 30457403 ~ 30464091 (-) False AMCG00013409
AMCG00013410 mRNA downstream 40397 30430664 ~ 30436741 (-) True AMCG00013410
AMCG00013403 mRNA downstream 136677 30333448 ~ 30340461 (-) True AMCG00013403
AMCG00013404 mRNA downstream 144438 30322265 ~ 30332700 (-) True AMCG00013404
AMCG00013405 mRNA downstream 186650 30286642 ~ 30290488 (-) True AMCG00013405
AMCG00013411 mRNA upstream 5111 30483305 ~ 30486316 (-) False AMCG00013411
AMCG00013419 mRNA upstream 29757 30507951 ~ 30521671 (-) True AMCG00013419
AMCG00013420 mRNA upstream 45713 30523907 ~ 30533879 (-) True AMCG00013420
AMCG00013421 mRNA upstream 145782 30623976 ~ 30635826 (-) True AMCG00013421
AMCG00013430 mRNA upstream 214881 30693075 ~ 30697703 (-) True AMCG00013430
TU55165 other downstream 17807 30455727 ~ 30459331 (-) True AMCG00013409
TU55155 other downstream 54113 30399887 ~ 30423025 (-) True G44243
TU55119 other downstream 186271 30288292 ~ 30290867 (-) False AMCG00013405
TU55007 other downstream 308002 30165817 ~ 30169136 (-) False AMCG00013390
TU54953 other downstream 393793 30081036 ~ 30083345 (-) False AMCG00013386
TU55168 other upstream 5325 30483519 ~ 30486331 (-) False AMCG00013411
TU55173 other upstream 5325 30483519 ~ 30486331 (-) True AMCG00013411
TU55169 other upstream 5522 30483716 ~ 30486331 (-) False AMCG00013411
TU55170 other upstream 5522 30483716 ~ 30486331 (-) False AMCG00013411
TU55745 other upstream 2087566 32565760 ~ 32567952 (-) True G44719

Expression Profile