RNA id: TU55098


Basic Information

Item Value
RNA id TU55098
length 3451
RNA type TUCP
GC content 0.56
exon number 5
gene id AMCG00013416
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30490827 ~ 30496613 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGGCTTGACGTCACTGCGCCCTAATGTTTAAGTGCGTCCATTGCGCGCATCCAGCTCAGTCCGTAGCAGCAGCGTCGTTGGATAAGGATAGGGTagtgttgctgttattattatcatcgtAGTACAGGAATAGCTTTAGCCACTAAGGTCCGCTGAGGAAGATGGTCGATAAGATGGATATGTCCTTGGACGACATCATTAAACAGAACCGGCAGCGGGGCGGAGGAGCAGGAGGGCTCCGTGGCGGGCGAGGCCGGGGCCGTGGAGGCTCGGGCGGGGGACGGGGCGCCGGGGCCGGCCGGCTCGGAGGtgcaggaggaggtggaggcGGCTTTGGTGGCCGCGGCGGAGCGTCGGGGCCTATGCGGTCTCGGCAGAACCTGAGCCGGGGCAGAAGCAGACCAACGCCGTACAGCAGGGTAGGAGAAAGAAAGATgatggggagagaggagagaaaaggaggagagaaaaTCGTGGCACCCGAAAATGCCCGGGTCTGCGGAGCTCTTGCGCTGTATTACCCTGTAGCTATCTCGGTGTGTAACCCCGGAGTATCTCTGGAGTCTGCGCCATCGAGTGGCGGTAGTAATTGGGCAGTGTTCAAAttacctctttttttttcccctgtaagGGGGAGATAATCTAGTGCTTAGTTTCTTTTCCCCGACCTGTTTAACCTCCcgtttgatttttgtttttaatctgagaGCGGGCGTGTGGGCCACGGCGCCATCTTGAAACCCTGGGCTGCTAAACAAGTGCCCGGGCTAAACAAAGCGCCCCCCGCAGAAGCTTTGGGTGTAAAGTGCACCAGTCAGCCCACACAGGGAGGTCTTCCCAACCGCGAAGAGGGCCGCTGCTGTCGGCGCGGAGAGCTACCCGGCCGagcaatgaatgaatgagtccGGCTCTTTTGTCTGCAGGAGCCCGGGAGGAAACCACATGCTCCGCATTTTTTCACTGCTTCAAACGGAGCGCCAGCATGCCTAAACGGGGATGAAGGAGCCACCATAATGAACTTTTAAAGTGAGCCAGGCAATTTGAAACCAATTAATCCCCCAAAAAGAGTGAGTTCGAACGGAGGGCCCCGGTGGTGGAgtttctataaaacaaaatggcgCCGCCACAAAATggacgctctctctctcagccgaCCGCACGGGTTTCCAGACCTTCCACACGAAGCTGGTGAAGACGGATCTGCTCGGCGCCAGATGAGTGATCATTACCGCCAATACGAACTGTATAACCCCCAGACCGCGGCGCTTAACGCAACACCCGTGAGAAATAAACTTTAAAGGCGGAGAGAGGGCGGGCGGACAAGGCCGGTGGCTCTTGAGGCTGTGTCGGATTGTGCGGTCCGGAGAGAGGGAGGCCATCGACGAGGGACCTGGTTGTATTAGAGCGGTGGATTCAGCGGCTGCTGCACCGTGGCTGCGACCCAGCGGGGAGAGACTCGTCGAGGGGAGGCCTGCCCCCCGGGTGCCCTGGCTGCGGCAGCGGGCTTTCCCGGCGGCGGACCCGGCTCTGGCGAGCAGGGTTGCGGGGGATCCGTTTCTAGAGCGGGAGGGCGGATTGGCGAGGGGCGGCGAATGGGTAGGCCTCGGCTGGCAGTGCGCCCCTCAGAGTCGGGTGCTACTTTTAGTTCTTTCCCCTCAGTTTTCTCTCAAGTCAACTATTTACAATCTATTGTATCAATGTCTGCCACTGTATTGTGTGAATTACTCgatatttactatttataccGCAGTCTCAGACCAGATTAGCGCTAGTCTCAATGCTGTTAAACCCGGCTGGGGCTAATCTGGGCCTGTGAAAGTACACGCGTGTCCACTTAATGTGATTATACTGTTTTAGTCACCATATATGACGGTTAAAagcttttagatttttttttttgtaatggctGCATAGTAGAAGGCTTCCTTACCAGGAATGGCAAAGGATGTCTTGGGGGGGGTGGTATAATTTAAAGGGGTGAAGTTCTTTCTAATTTAGACTGCTTCTGTAGTTGCATGTTAAATTTAGTCCATGTCAGATGCTAGACAGACCAAAGGAAATGAGATCACCCCTCTGTAACAAGTCTTGAATGGTGGGGTAGATTGTGGAGGCTGTGCAAGGTGGACTGACTGCCCCTGCCCCTGGACCCTGTACTCTTGGACCGGGGAGGGGGCCCGCCGGACCTGGTGCCTGGCTCAGGCCTGTGCTGTCCTCGTGTCAGACAGGCGAGTGGACAGTCAGCAGGTGCGTTCTCTTTGCTCTCTTGCAGCCCAAGCAGCTTCCAGACAAGTGGCAACACGACCTGTTCGACAGTGGCTTCGGTGCCAGTGGGGGCGgtggcggtggtggtggtgctggcGTGGAGACTGGCGGGAAGCTCCTGGTCTCCAACCTTGATTTTGGGGTCTCCGATGCAGACATCCAGGAGCTGTTCGCGGAGTTCGGCACGCTGAAGAAGGCAGCAGTGCACTACGACAGGTCGGGCCGCAGCCTCGGCACTGCGGACGTGCACTTCGAGAGGAAGGCCGACGCACTCAAGGCCATGAAACAGTACAACGGAGTCCCACTGGACGGCCGGCCCATGAACATCCAGCTCGTCACATCTCAGATTGACACACAGAGACGGCCCCCCATCCAGAGtCTGAGCCGAGGTGGTGGGGGCATGAACAGGAGCCGGGTAGGCACCCTTGGCGGGGGCAGCTTCGGTGGGATGCCCCGGCGGGGGGCccgaggtggtggtggtggtggcggcgGCAGCAGGGGCCGAGGGAGGGGTGGCAGGAACACCAGTAAACAGCAGCTGTCAGCCGAGGAGCTGGATGCACAGCTGGACGCCTACAACGCCCGGATGGACACCAGCTAAGATGACTGAAGTCCCGCCGCATCAAATcgtgtttcattttttttccctcttgcCTGGGGAGGGATTGTGCACCATTGCTGCAGTGGACatgttggggagggggggctttTACACTTAGTCTCATTTTGGAAtaggttttaaacattttttatttttttttatttttttttttttgtactgaaaCTTTGGGGGGGGAGTTAAGAGTTGCCTGTGGCTGCAGGGTTTTTAAAGGGGGCTGTGGGAGGGGGGGTTGCGGTGTGTAGTTGCTTGGATACCtgggccccctccccctctccctccccttggATCATTGTAATAAACCTGCAGTGTATATTAACCTCACACCCTGTGTctgcctgctttttttttttttgtgctgtctTGGAGGTCCACTGTCCCGGGGTCCTGCAGCCGGGCTCAGGGAGGCAGCTACCTGACTCGTCCAATGTCTGTAAACTGCCCGGAGCCCAGCCAGGCTGGAGTCTCGCTGACCTGATGCACAtcagtgtttttgttaaatCCTTTTTGCGTCTGCTGTTGCAACTTTTTAATGTTcattaaatggttttattttaatgttgaaacTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55089 lncRNA upstream 33156 30455672 ~ 30457671 (+) True G44182
TU55072 lncRNA upstream 60178 30426624 ~ 30430649 (+) True AMCG00013408
TU55048 lncRNA upstream 146904 30342469 ~ 30343923 (+) False AMCG00013399
TU54949 lncRNA upstream 400712 30088803 ~ 30090115 (+) False AMCG00013388
TU54935 lncRNA upstream 425335 30063408 ~ 30065492 (+) False AMCG00013382
TU55241 lncRNA downstream 238880 30734536 ~ 30734795 (+) True G44306
TU55242 lncRNA downstream 241153 30736809 ~ 30737487 (+) True G44307
TU55258 lncRNA downstream 276725 30772381 ~ 30774068 (+) True G44322
TU55259 lncRNA downstream 278526 30774182 ~ 30774548 (+) True G44323
TU55328 lncRNA downstream 427090 30922746 ~ 30934437 (+) True G44379
AMCG00013407 mRNA upstream 37873 30439674 ~ 30452954 (+) True AMCG00013407
AMCG00013408 mRNA upstream 61680 30425007 ~ 30429147 (+) False AMCG00013408
AMCG00013406 mRNA upstream 100351 30365872 ~ 30390476 (+) True AMCG00013406
AMCG00013401 mRNA upstream 138992 30345321 ~ 30351835 (+) True AMCG00013401
AMCG00013399 mRNA upstream 146822 30339802 ~ 30344005 (+) True AMCG00013399
AMCG00013418 mRNA downstream 30199 30525855 ~ 30534025 (+) True AMCG00013418
AMCG00013415 mRNA downstream 41147 30536803 ~ 30541363 (+) True AMCG00013415
AMCG00013414 mRNA downstream 51987 30547643 ~ 30557225 (+) True AMCG00013414
AMCG00013413 mRNA downstream 64825 30560481 ~ 30562562 (+) True AMCG00013413
AMCG00013417 mRNA downstream 67584 30563240 ~ 30566550 (+) False AMCG00013417
TU55045 other upstream 268618 30218910 ~ 30222209 (+) False AMCG00013396
TU54850 other upstream 562130 29921067 ~ 29928697 (+) False AMCG00013375
TU54772 other upstream 831879 29640623 ~ 29658948 (+) False AMCG00013364
TU54615 other upstream 1386250 29104289 ~ 29104577 (+) True G43802
TU54454 other upstream 2002044 28484273 ~ 28488783 (+) True G43682
TU55111 other downstream 67712 30563368 ~ 30568219 (+) True AMCG00013417
TU55261 other downstream 281195 30776851 ~ 30777169 (+) True G44325
TU55551 other downstream 1409312 31904968 ~ 31911801 (+) True AMCG00013468
TU55622 other downstream 1777612 32273268 ~ 32283499 (+) False AMCG00013473
TU55641 other downstream 1927620 32423276 ~ 32429887 (+) False AMCG00013478

Expression Profile