RNA id: AMCG00013417



Basic Information


Item Value
RNA id AMCG00013417
length 504
RNA type mRNA
GC content 0.61
exon number 4
gene id AMCG00013417
representative False

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30563240 ~ 30568219 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGTATCGCCCAGCCAAGGCCGCTCTCAAACCAAACTTTATCGGCAGCCCCCGCAGACGGACACTCGCACACAGTCGAGCGCGGCTTCCGCCCGGCCTTCCCGGAAGAGGTTGGTTGGCATTGGCAACGTCACGGCCGGCGGAGGCCTCGAGCTGCAGCGAGAGCGacgagaaagagaaagaaaagaaagaagagaagaaagagaaCGAAACAGctcaTCAGCCTCTAGGATCGTTCACAACTATAAGCGGACCTCCAGCCCCCGGTCCCCCCCCAGCGTGGGCGAGCTCTTCACGCCGGCCCATGAGGAGAACGTACGCTTCATCCACGACACCTGGCAGTGTGTGCTGAGAGACATCAAGACCCCCCAGGGCAGCGAGCGCAATGACCGGGGGCCCCAAGAGTACGTGGAGAAGAACCCCAACCCCAGCCTGCACTCGTTCACTCCGGTTGACCTGAGTGACCTGAAGCGCCGCAGCTCACAGGACGCCAAGAAGTCTTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU55089 lncRNA upstream 105569 30455672 ~ 30457671 (+) True G44182
TU55072 lncRNA upstream 132591 30426624 ~ 30430649 (+) True AMCG00013408
TU55048 lncRNA upstream 219317 30342469 ~ 30343923 (+) False AMCG00013399
TU54949 lncRNA upstream 473125 30088803 ~ 30090115 (+) False AMCG00013388
TU54935 lncRNA upstream 497748 30063408 ~ 30065492 (+) False AMCG00013382
TU55241 lncRNA downstream 167986 30734536 ~ 30734795 (+) True G44306
TU55242 lncRNA downstream 170259 30736809 ~ 30737487 (+) True G44307
TU55258 lncRNA downstream 205831 30772381 ~ 30774068 (+) True G44322
TU55259 lncRNA downstream 207632 30774182 ~ 30774548 (+) True G44323
TU55328 lncRNA downstream 356196 30922746 ~ 30934437 (+) True G44379
AMCG00013413 mRNA upstream 678 30560481 ~ 30562562 (+) True AMCG00013413
AMCG00013414 mRNA upstream 6015 30547643 ~ 30557225 (+) True AMCG00013414
AMCG00013415 mRNA upstream 21877 30536803 ~ 30541363 (+) True AMCG00013415
AMCG00013418 mRNA upstream 29215 30525855 ~ 30534025 (+) True AMCG00013418
AMCG00013416 mRNA upstream 66627 30490989 ~ 30496613 (+) False AMCG00013416
AMCG00013424 mRNA downstream 141235 30707785 ~ 30711079 (+) True AMCG00013424
AMCG00013423 mRNA downstream 160535 30727085 ~ 30729235 (+) True AMCG00013423
AMCG00013422 mRNA downstream 203713 30770263 ~ 30772373 (+) True AMCG00013422
AMCG00013437 mRNA downstream 293174 30859724 ~ 30871739 (+) True AMCG00013437
AMCG00013438 mRNA downstream 326882 30893432 ~ 30895656 (+) True AMCG00013438
TU55098 other upstream 67584 30490827 ~ 30495656 (+) True AMCG00013416
TU55045 other upstream 341031 30218910 ~ 30222209 (+) False AMCG00013396
TU54850 other upstream 634543 29921067 ~ 29928697 (+) False AMCG00013375
TU54772 other upstream 904292 29640623 ~ 29658948 (+) False AMCG00013364
TU54615 other upstream 1458663 29104289 ~ 29104577 (+) True G43802
TU55261 other downstream 210301 30776851 ~ 30777169 (+) True G44325
TU55551 other downstream 1338418 31904968 ~ 31911801 (+) True AMCG00013468
TU55622 other downstream 1706718 32273268 ~ 32283499 (+) False AMCG00013473
TU55641 other downstream 1856726 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other downstream 1856726 32423276 ~ 32429887 (+) True AMCG00013478

Expression Profile