RNA id: TU55111


Basic Information

Item Value
RNA id TU55111
length 2169
RNA type TUCP
GC content 0.59
exon number 5
gene id AMCG00013417
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30563240 ~ 30568219 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTCACGGCCGGCGGAGGCCTCGAGCTGCAGCGAGAGCGacgagaaagagaaagaaaagaaagaagagaagaaagagaaCGAAACAGGGCTCTCTCTCCGGGCGAGGAGCATCACTCAGGAGCAGAAACGTACGTGGCGTggtggagagaggaagagggagagagtggtgACTGAAGagtgagagggagtgagagagagagaaatgaccAGctcaTCAGCCTCTAGGATCGTTCACAACTATAAGCGGACCTCCAGCCCCCGGTCCCCCCCCAGCGTGGGCGAGCTCTTCACGCCGGCCCATGAGGAGAACGTACGCTTCATCCACGACACCTGGCAGTGTGTGCTGAGAGACATCAAGACCCCCCAGGGCAGCGAGCGCAATGACCGGGGGCCCCAAGAGTACGTGGAGAAGAACCCCAACCCCAGCCTGCACTCGTTCACTCCGGTTGACCTGAGTGACCTGAAGCGCCGCAGCTCACAGGACGCCAAGAAGTCTTAGTACCACCCCCCCGTGTGGCGTCCCCTGTGGAgagctctcctcctcctcaccccaTCAGTCAGTCCATCAGCTTCCTCTCATCTCCAAAAAAAAACCCCACCTCGCCAGCTCTTGCTTCCCGCccccgccgccccccccccccagacccAGATGCCATCGCCTCTCCGTGTCGACCCTCCAGGCCCAGCGGCCTCGGACTGGCTGGCCTGGCGTCGGACTGTGCAAGAGCCGGGGTGCCATGGCCGAGCTTCTCACCGGGGGCCGCCACCACTTCCTCCCCTCCTTCTGGCGCCGGTCTGAACCGCTCCGGCTGGCCAGCATCCCCCTCGACCCGTAGACACCCAGTCTGTGCTGCCCTGAGCCATGCCATACCAGGGGAGAGGAGAGTGGTGGAGAGACGGGAGGTCAGAcgaagagaggggagaggaggcaGGTTGGTGTGCTGCGGCGCCCCCTCTGGCCACACGGCACCGCTTGGCTCTTCCTCTGCCagcttcctccccctctccaccaGGCTCGGCACCCCAGCCCCTCCCTCACCGGAAATAAACCAGGAAGACAGAAACCTCTGTTTCGCTGTGATGCCCGGTCCACGTGCTCTCCGGCTCCTCTGCTCTACTGGGCCTGGGTCAGGAGTCCCACGGCTGGTTTTGGGTTTGGGAACAGCACCACCTCTTGGGCCCAGCTGGCGTCCCCATGGTGTGGCGCCCTCTGGCTGTGTGCGGCGTCCGTGGCTCGTCCCCGAGGAGGTGAGGTCTGTGCTTCGGTCCCTGTGAGTTCAGCAGCATCGTCCACCCTGCTCCCCTTCCTTCAGCACCGACCCAGATTTCGATGAAACTCTTCAAGGTCTTCCAGGGAATGTTGCTCAggggcatctctctctccaggatgcccctctcctcctcctcttcctccctgcAGTCAGATCAGCAGTGCTGGGAGGCAAGAGGAGCTTGCTGCGGGGTTATtttatgcaaaaaaacaagatgaCAATAATTAGATGGACGTGTGAGAGCAGCCGTGTGCTGCCGATGCAGGGGTCTGCTGTCACCGCCTTGCCCTCGACCCCCGCCCGAGCTGGAGCCTCATGGAGCCGCAGCCAACAAAGACGAGAAGAAAAAAGTCAAACCCAGCTGGACTGTTGAGACGGATGTGATTCTGCAATGAATTCTCCCTGACACAGCAGGTGGAGGGGCGTTCAAAcggcgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctgtgtgcgagAGGGAGCGCCGGGGTCAGGGCTGCCATGTTGGGTTTACACGGCTGTGTCGAGAGGGGTTGGCTGCGGCGAACAGAGGAGGGACCCCACGGCCCCCTGGGTGCGAGGGCCGTCCTGCTCTTAAACCAGTGTTATCTGTTGCTTTTTCTGAAAGTGAGACGACttgcacacaacaacaacacaaacaacgtGGATAGAGACTGGGGTTTGTAATGGGAGAGTACTGTGTAAATAAAGATTTCTTTAGACTacttgtgatttatttgtattaatgtttgaaaatgaCCCCCCAGTGCCCTTAATTTCACCTGCACGAGCGGAGAGACCAATCTCCCCCATCTCACTCTGTCCCTCGATCGGTGTTAGTGTGGCGATTGTTGTTTCTGAATCGTTTGCCGGCTGAGGTGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55089 lncRNA upstream 105697 30455672 ~ 30457671 (+) True G44182
TU55072 lncRNA upstream 132719 30426624 ~ 30430649 (+) True AMCG00013408
TU55048 lncRNA upstream 219445 30342469 ~ 30343923 (+) False AMCG00013399
TU54949 lncRNA upstream 473253 30088803 ~ 30090115 (+) False AMCG00013388
TU54935 lncRNA upstream 497876 30063408 ~ 30065492 (+) False AMCG00013382
TU55241 lncRNA downstream 166317 30734536 ~ 30734795 (+) True G44306
TU55242 lncRNA downstream 168590 30736809 ~ 30737487 (+) True G44307
TU55258 lncRNA downstream 204162 30772381 ~ 30774068 (+) True G44322
TU55259 lncRNA downstream 205963 30774182 ~ 30774548 (+) True G44323
TU55328 lncRNA downstream 354527 30922746 ~ 30934437 (+) True G44379
AMCG00013413 mRNA upstream 806 30560481 ~ 30562562 (+) True AMCG00013413
AMCG00013414 mRNA upstream 6143 30547643 ~ 30557225 (+) True AMCG00013414
AMCG00013415 mRNA upstream 22005 30536803 ~ 30541363 (+) True AMCG00013415
AMCG00013418 mRNA upstream 29343 30525855 ~ 30534025 (+) True AMCG00013418
AMCG00013416 mRNA upstream 66755 30490989 ~ 30496613 (+) False AMCG00013416
AMCG00013424 mRNA downstream 139566 30707785 ~ 30711079 (+) True AMCG00013424
AMCG00013423 mRNA downstream 158866 30727085 ~ 30729235 (+) True AMCG00013423
AMCG00013422 mRNA downstream 202044 30770263 ~ 30772373 (+) True AMCG00013422
AMCG00013437 mRNA downstream 291505 30859724 ~ 30871739 (+) True AMCG00013437
AMCG00013438 mRNA downstream 325213 30893432 ~ 30895656 (+) True AMCG00013438
TU55098 other upstream 67712 30490827 ~ 30495656 (+) True AMCG00013416
TU55045 other upstream 341159 30218910 ~ 30222209 (+) False AMCG00013396
TU54850 other upstream 634671 29921067 ~ 29928697 (+) False AMCG00013375
TU54772 other upstream 904420 29640623 ~ 29658948 (+) False AMCG00013364
TU54615 other upstream 1458791 29104289 ~ 29104577 (+) True G43802
TU55261 other downstream 208632 30776851 ~ 30777169 (+) True G44325
TU55551 other downstream 1336749 31904968 ~ 31911801 (+) True AMCG00013468
TU55622 other downstream 1705049 32273268 ~ 32283499 (+) False AMCG00013473
TU55641 other downstream 1855057 32423276 ~ 32429887 (+) False AMCG00013478
TU55642 other downstream 1855057 32423276 ~ 32429887 (+) True AMCG00013478

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1268413 False 2594 TUCP 0.40 4 NC_048576.1 79050005 ~ 79052934 (+)