RNA id: AMCG00013418


Basic Information

Item Value
RNA id AMCG00013418
length 402
RNA type mRNA
GC content 0.59
exon number 4
gene id AMCG00013418
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30525855 ~ 30534025 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGCCTGCAGCTGGGTGCCCTCCTCAGGGGCGATCGGTGCATCGCTGGCGATGTTCAGGAAGATCAGGATTCCTTCCGAAGCGGTTATGCTTCTTGGCATGCCGAAGAAGCCCTCTCCTGATTGCACAAAGACACAGGATCTCTCCAATGCCAATGAAAATGCCAGACAGCCTGATCAGACCCTTGGCATCATCACAAAAGCGGGTCATGGTGCCAATGCAGGTGCCATAGACACCACTGTAGAACGTCAGTTCCAGGCCTGTAGGGCCGACGTGCGCGTCGCCGCTCCCGGAAGCGTGTCGTGCGGGCGGCTCCGCTCCCTGATCGCCATTCTTGCCCGGTCGAGCGGAGCAGCTGAGGCACGCAGACATCACGGTGAACCGCGCTACAAGAGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55089 lncRNA upstream 68184 30455672 ~ 30457671 (+) True G44182
TU55072 lncRNA upstream 95206 30426624 ~ 30430649 (+) True AMCG00013408
TU55048 lncRNA upstream 181932 30342469 ~ 30343923 (+) False AMCG00013399
TU54949 lncRNA upstream 435740 30088803 ~ 30090115 (+) False AMCG00013388
TU54935 lncRNA upstream 460363 30063408 ~ 30065492 (+) False AMCG00013382
TU55241 lncRNA downstream 200511 30734536 ~ 30734795 (+) True G44306
TU55242 lncRNA downstream 202784 30736809 ~ 30737487 (+) True G44307
TU55258 lncRNA downstream 238356 30772381 ~ 30774068 (+) True G44322
TU55259 lncRNA downstream 240157 30774182 ~ 30774548 (+) True G44323
TU55328 lncRNA downstream 388721 30922746 ~ 30934437 (+) True G44379
AMCG00013416 mRNA upstream 29242 30490989 ~ 30496613 (+) False AMCG00013416
AMCG00013407 mRNA upstream 72901 30439674 ~ 30452954 (+) True AMCG00013407
AMCG00013408 mRNA upstream 96708 30425007 ~ 30429147 (+) False AMCG00013408
AMCG00013406 mRNA upstream 135379 30365872 ~ 30390476 (+) True AMCG00013406
AMCG00013401 mRNA upstream 174020 30345321 ~ 30351835 (+) True AMCG00013401
AMCG00013415 mRNA downstream 2778 30536803 ~ 30541363 (+) True AMCG00013415
AMCG00013414 mRNA downstream 13618 30547643 ~ 30557225 (+) True AMCG00013414
AMCG00013413 mRNA downstream 26456 30560481 ~ 30562562 (+) True AMCG00013413
AMCG00013417 mRNA downstream 29215 30563240 ~ 30566550 (+) False AMCG00013417
AMCG00013424 mRNA downstream 173760 30707785 ~ 30711079 (+) True AMCG00013424
TU55098 other upstream 30199 30490827 ~ 30495656 (+) True AMCG00013416
TU55045 other upstream 303646 30218910 ~ 30222209 (+) False AMCG00013396
TU54850 other upstream 597158 29921067 ~ 29928697 (+) False AMCG00013375
TU54772 other upstream 866907 29640623 ~ 29658948 (+) False AMCG00013364
TU54615 other upstream 1421278 29104289 ~ 29104577 (+) True G43802
TU55111 other downstream 29343 30563368 ~ 30568219 (+) True AMCG00013417
TU55261 other downstream 242826 30776851 ~ 30777169 (+) True G44325
TU55551 other downstream 1370943 31904968 ~ 31911801 (+) True AMCG00013468
TU55622 other downstream 1739243 32273268 ~ 32283499 (+) False AMCG00013473
TU55641 other downstream 1889251 32423276 ~ 32429887 (+) False AMCG00013478

Expression Profile