RNA id: AMCG00013420


Basic Information

Item Value
RNA id AMCG00013420
length 765
RNA type mRNA
GC content 0.54
exon number 7
gene id AMCG00013420
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 30523907 ~ 30533879 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGGCGGGGCGTGTGCCGCGCGCCCACGAGGAGGGAGTGCAGGGCATGGCCATTATATATGGGGTGTTCTCAGCCTCGAACCTCACACAGTCTGTAGTGGCTGTAATTGGACCTCAGCTGTCAATGCTCATAAGCGTCTTATGGACAGCCCAAGGCAACTTTCTGACCATCAACTCTACAGATGACACCATTGGCAGAAACGAGAAAGCCCTTCAGCTGTGCTTCACCAATGAGATGATGCTCCTTAGTATCTCCATCGCACACACAGGCCTGGAACTGACGTTCTACAGTGGTGTCTATGGCACCTGCATTGGCACCATGACCCGCTTTTGTGATGATGCCAAGGGTCTGATCAGGCTGTCTGGCATTTTCATTGGCATTGGAGAGATCCTAGAATGCAAACCCTTCCCCCAAACCTCCACCTCCCTCCCTGACCTGTGTCTTTGTGCAATCAGGAGAGGGCTTCTTCGGCATGCCAAGAAGCATAACCGCTTCGGAAGGAATCCTGTGGTGCTACTGGGACTAATCACCCACTACCTGGCATTCTACCTGATCTTCCTGAACATCGCCAGCGATGCACCGATCGCCCCTGAGGAGGGCACCCAGCTGCAGGCCTTCATTACACCCAGGCCTGTTGTGATGTATTTGCAGTCCATCAGTGCAGCGGTGGCCTTCTACACCAACTACCTCCTCTTGGAGTGGCAGCTCCTCATCATGGTACGTAAATGGAACCTAAACTTCTTCCTGGCTGAACAGACGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55124 lncRNA downstream 68301 30384686 ~ 30455606 (-) True G44213
TU55141 lncRNA downstream 213141 30307026 ~ 30310766 (-) True G44230
TU55012 lncRNA downstream 348601 30173492 ~ 30175306 (-) False AMCG00013390
TU54958 lncRNA downstream 433760 30088803 ~ 30090147 (-) True G44086
TU54905 lncRNA downstream 462273 30040205 ~ 30061634 (-) True AMCG00013384
TU55187 lncRNA upstream 92 30533971 ~ 30539317 (-) True G44261
TU55177 lncRNA upstream 6434 30540313 ~ 30542858 (-) True G44256
TU55180 lncRNA upstream 6789 30540668 ~ 30562691 (-) False G44256
TU55192 lncRNA upstream 17510 30551389 ~ 30552050 (-) True G44264
TU55183 lncRNA upstream 19902 30553781 ~ 30599051 (-) True G44259
AMCG00013419 mRNA downstream 2236 30507951 ~ 30521671 (-) True AMCG00013419
AMCG00013411 mRNA downstream 37591 30483305 ~ 30486316 (-) False AMCG00013411
AMCG00013412 mRNA downstream 41581 30468630 ~ 30482326 (-) True AMCG00013412
AMCG00013409 mRNA downstream 59816 30457403 ~ 30464091 (-) False AMCG00013409
AMCG00013410 mRNA downstream 87166 30430664 ~ 30436741 (-) True AMCG00013410
AMCG00013421 mRNA upstream 90097 30623976 ~ 30635826 (-) True AMCG00013421
AMCG00013430 mRNA upstream 159196 30693075 ~ 30697703 (-) True AMCG00013430
AMCG00013432 mRNA upstream 164361 30698240 ~ 30700665 (-) True AMCG00013432
AMCG00013427 mRNA upstream 168887 30702766 ~ 30705013 (-) True AMCG00013427
AMCG00013426 mRNA upstream 177630 30711509 ~ 30723530 (-) True AMCG00013426
TU55168 other downstream 37576 30483519 ~ 30486331 (-) False AMCG00013411
TU55173 other downstream 37576 30483519 ~ 30486331 (-) True AMCG00013411
TU55169 other downstream 37576 30483716 ~ 30486331 (-) False AMCG00013411
TU55170 other downstream 37576 30483716 ~ 30486331 (-) False AMCG00013411
TU55166 other downstream 45713 30477138 ~ 30478194 (-) False AMCG00013412
TU55745 other upstream 2031881 32565760 ~ 32567952 (-) True G44719
TU55769 other upstream 2088302 32622181 ~ 32623918 (-) False AMCG00013488
TU56122 other upstream 3144345 33678224 ~ 33678907 (-) True G45037
TU56130 other upstream 3158965 33692844 ~ 33699528 (-) True AMCG00013531
TU56648 other upstream 6425298 36959177 ~ 36959914 (-) True G45468

Expression Profile